Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Release score 2.0.0 #261

Merged
merged 2 commits into from
Sep 6, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions library_schemas/score/CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# CHANGELOG for HED score library schema

## Major release score 2.0.0 September 6, 2024.

Many tags were deleted, reorganized or renamed. Spreadsheets containing the work and mappings are available under
release notes for 2.0.0 on GitHub.

## Changes for score 1.2.0 released July 16, 2024.

**Tags moved (Minor):**
Expand Down
87 changes: 48 additions & 39 deletions library_schemas/score/README.md
Original file line number Diff line number Diff line change
@@ -1,39 +1,48 @@
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7897596.svg)](https://doi.org/10.5281/zenodo.7897596)

# HED SCORE Library Schema

This schema is a Hierarchical Event Descriptors (HED) Library Schema implementation of Standardized Computer-based Organized Reporting of EEG (SCORE)[1,2] for describing events occurring during neuroimaging time series recordings.
The HED-SCORE library schema allows neurologists, neurophysiologists, and brain researchers to annotate electrophysiology recordings using terms from an internationally accepted set of defined terms (SCORE) compatible with the HED framework.
The resulting annotations are understandable to clinicians and directly usable in computer analysis.

Future extensions may be implemented in the HED-SCORE library schema.
For more information see the [**hed-schemas docs**](https://hed-schemas.readthedocs.io/en/latest/).

The Standardized Computer-based Organized Reporting of EEG (SCORE) is a standard terminology for scalp EEG data assessment designed for use in clinical practice that may also be used for research purposes.
The SCORE standard defines terms for describing phenomena observed in scalp EEG data. It is also potentially applicable (with some suitable extensions) to EEG recorded in critical care and neonatal settings.
The SCORE standard received European consensus and has been endorsed by the European Chapter of the International Federation of Clinical Neurophysiology (IFCN) and the International League Against Epilepsy (ILAE) Commission on European Affairs.
A second revised and extended version of SCORE achieved international consensus.

### Viewing the SCORE HED Library Schema
> The HED SCORE library can be viewed using the [**HED Schema Browser**](https://www.hedtags.org/display_hed.html).

### References

> [1] Pal Attia, T. et al. (2023 preprint).
> *Hierarchical Event Descriptor library schema for EEG data annotation*
> [https://arxiv.org/abs/2310.15173](https://arxiv.org/abs/2310.15173).

> [2] Beniczky, S, et al. (2013).
> *Standardized computer based organized reporting of EEG: SCORE.*
> Epilepsia 54.6 (2013).

> [3] Beniczky, S., et al. (2017).
> *Standardized computer based organized reporting of EEG: SCORE second version.*
> Clinical Neurophysiology 128.11 (2017).

## Stable links for HED SCORE

> [**Stable directory link for schema lookup**](https://github.com/hed-standard/hed-schemas/tree/main/library_schemas/score/hedxml)

> [**Stable link for latest version**](https://raw.githubusercontent.com/hed-standard/hed-schemas/main/library_schemas/score/hedxml/HED_score_Latest.xml)

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.7897596.svg)](https://doi.org/10.5281/zenodo.7897596)

# HED SCORE Library Schema

This schema is a Hierarchical Event Descriptors (HED) Library Schema implementation of Standardized Computer-based Organized Reporting of EEG (SCORE)[1,2] for describing events occurring during neuroimaging time series recordings.
The HED-SCORE library schema allows neurologists, neurophysiologists, and brain researchers to annotate electrophysiology recordings using terms from an internationally accepted set of defined terms (SCORE) compatible with the HED framework.
The resulting annotations are understandable to clinicians and directly usable in computer analysis.

Future extensions may be implemented in the HED-SCORE library schema.
For more information see the [**hed-schemas docs**](https://hed-schemas.readthedocs.io/en/latest/).

The Standardized Computer-based Organized Reporting of EEG (SCORE) is a standard terminology for scalp EEG data assessment designed for use in clinical practice that may also be used for research purposes.
The SCORE standard defines terms for describing phenomena observed in scalp EEG data. It is also potentially applicable (with some suitable extensions) to EEG recorded in critical care and neonatal settings.
The SCORE standard received European consensus and has been endorsed by the European Chapter of the International Federation of Clinical Neurophysiology (IFCN) and the International League Against Epilepsy (ILAE) Commission on European Affairs.
A second revised and extended version of SCORE achieved international consensus.

### Viewing the SCORE HED Library Schema
> The HED SCORE library can be viewed using the [**HED Schema Browser**](https://www.hedtags.org/display_hed.html).

### Transition from HED SCORE major version 1 to 2

HED SCORE release 2.0.0 represents a major reorganization of HED SCORE so that it more closely aligns with the
nominal scores standard as specified in Beniczky et al. 2013, 2017.
The artifacts were moved to the HED standard schema and HED hierarchy was reorganized to better reflect
the underlying concepts. The formal GitHub release of 2.0.0 includes a spreadsheet explaining
how each term in HED SCORE 1.2.0 evolved in HED SCORE 2.0.0.


### References

> [1] Pal Attia, T. et al. (2023 preprint).
> *Hierarchical Event Descriptor library schema for EEG data annotation*
> [https://arxiv.org/abs/2310.15173](https://arxiv.org/abs/2310.15173).

> [2] Beniczky, S, et al. (2013).
> *Standardized computer based organized reporting of EEG: SCORE.*
> Epilepsia 54.6 (2013).

> [3] Beniczky, S., et al. (2017).
> *Standardized computer based organized reporting of EEG: SCORE second version.*
> Clinical Neurophysiology 128.11 (2017).

## Stable links for HED SCORE

> [**Stable directory link for schema lookup**](https://github.com/hed-standard/hed-schemas/tree/main/library_schemas/score/hedxml)

> [**Stable link for latest version**](https://raw.githubusercontent.com/hed-standard/hed-schemas/main/library_schemas/score/hedxml/HED_score_Latest.xml)

Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
Prefix ID
dc: contributor
dc: creator
dc: date
dc: description
dc: format
dc: identifier
dc: language
dc: publisher
dc: relation
dc: source
dc: subject
dc: title
dc: type
foaf: homepage
terms: license
obo: has_dbxref
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label Type dc:description
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label Type omn:Domain omn:Range Properties dc:description
Original file line number Diff line number Diff line change
@@ -0,0 +1,11 @@
prefix namespace IRI definition
rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# The RDF namespace [RDF-CONCEPTS]
rdfs: http://www.w3.org/2000/01/rdf-schema#
xsd: http://www.w3.org/2000/10/XMLSchema# XML Schema Namespace [XMLSCHEMA11-2]
xml: http://www.w3.org/XML/1998/namespace
owl: http://www.w3.org/2002/07/owl# The OWL namespace [OWL2-OVERVIEW]
prov: http://www.w3.org/ns/prov# The PROV namespace [PROV-DM]
dc: http://purl.org/dc/elements/1.1/ The Dublin Core elements
terms: http://purl.org/dc/terms/ The Dublin Core terms
foaf: http://xmlns.com/foaf/0.1/ Friend-of-a-Friend http://xmlns.com/foaf/spec/
obo: http://purl.obolibrary.org/obo/ Open Biomedical Ontologies
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label omn:SubClassOf hasUnitClass Attributes dc:description omn:EquivalentTo
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
hedId rdfs:label omn:SubClassOf Attributes dc:description omn:EquivalentTo
Loading