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Add exemplar tags #256

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merged 6 commits into from
Aug 2, 2024
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neuromechanist
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I have added a couple of tags with references in the Annotation column.
I think there are some outstanding points:

  1. Should the database names also defined in the prefixes (I assume not, because the names are already available in OBO)
  2. Should we use has_dbxref or db_xref for cross-referencing (or any other label)? has_dbxref is defined here and db_xref is defined here.
  3. What should I do for the abbreviations, like LHJ and RHJ? Many of them are quite well-known and handy to use

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This is a good first start. I am pretty sure that the links we will want to add will all be AnnotationProperty types (like has_dbxref) so we won't need any different infrastructure.

I have commented on the syntax problems above. After we finalize exactly which thing we will use, this will just need the syntax corrected.

@neuromechanist
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Thanks Kay,

I corrected the Annotations and added obo to the prefix table.

@VisLab VisLab self-requested a review August 1, 2024 10:24
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There are some circular or incorrect references and other syntax errors:

  • Head-landmark lists its parent as Anatomical-landmarks. It should be Anatomical-landmark
  • Torso-chest-landmark also lists Anatomical-landmarks as it parent.
  • HED tag names cannot have blanks or parentheses. By convention only first letter is capitalized.
    • Left-helix-tragus-junction
    • Right-helix-tragus-junction
    • Vertebra-promines

The stuff in parentheses should probably go in the description.

@neuromechanist
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There are some circular or incorrect references and other syntax errors:

  • Head-landmark lists its parent as Anatomical-landmarks. It should be Anatomical-landmark

  • Torso-chest-landmark also lists Anatomical-landmarks as it parent.

  • HED tag names cannot have blanks or parentheses. By convention only first letter is capitalized.

    • Left-helix-tragus-junction
    • Right-helix-tragus-junction
    • Vertebra-promines

The stuff in parentheses should probably go in the description.

Addressed!

@VisLab VisLab merged commit ab2496f into hed-standard:main Aug 2, 2024
@neuromechanist neuromechanist deleted the slam_add_sample_terms branch August 2, 2024 20:26
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3 participants