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Merge pull request #280 from neuromechanist/slam_second-try
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add the terms with cross refs for all landmarks
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@VisLab
VisLab authored Nov 4, 2024
2 parents 5facc53 + 83d7ba0 commit 93db2b4
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27 changes: 26 additions & 1 deletion library_schemas/slam/prerelease/HED_slam_1.0.0.mediawiki
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Expand Up @@ -6,17 +6,42 @@ The HED SLAM(Sensor Location and Motion) HED library schema is designed to stand
!# start schema

'''Anatomical-landmark''' <nowiki>{rooted=Anatomical-item} [A collection of specific points on the human body used for anatomical and sensor placement reference.]</nowiki>
* Abdomen-landmark <nowiki>[Points on the abdomen used as reference landmarks.]</nowiki>
** Anterior-Superior-Iliac-Spine-ASIS <nowiki>[The forwardmost point of the iliac crest.]</nowiki>
** Posterior-Superior-Iliac-Spine-PSIS <nowiki>[The rearmost point of the iliac crest.]</nowiki>
** Umbilicus <nowiki>[The navel or belly button.]</nowiki>
* Foot-landmark <nowiki>[Points on the foot used as reference landmarks.]</nowiki>
** Calcaneal-Tuberosity-CT <nowiki>[The bony prominence at the heel.]</nowiki>
** First-Metatarsal-Head-FMH <nowiki>[The tip of the big toe.]</nowiki>
** Lateral-Malleolus-LM <nowiki>[The bony prominence on the lateral side of the ankle.]</nowiki>
** Medial-Malleolus-MM <nowiki>[The bony prominence on the medial side of the ankle.]</nowiki>
* Forearm-landmark <nowiki>[Points on the forearm used as reference landmarks.]</nowiki>
** Radial-Styloid-Process-RSP <nowiki>[The bony prominence on the radius bone at the wrist.]</nowiki>
** Ulnar-Styloid-Process-USP <nowiki>[The bony prominence on the ulna bone at the wrist.]</nowiki>
* Hand-landmark <nowiki>[Points on the hand used as reference landmarks.]</nowiki>
** Third-Metacarpophalangeal-Joint-MCP <nowiki>[The knuckle of the middle finger.]</nowiki>
* Head-landmark <nowiki>[Points on the head used as reference landmarks.]</nowiki>
** Inion <nowiki>[The most prominent point of the occipital bone at the back of the head.]</nowiki>
** Left-helix-tragus-junction-LHJ <nowiki>[The point where the helix meets the tragus of the left ear.]</nowiki>
** Mastoid-process
** Mastoid-process <nowiki>[The process of the temporal bone behind the ear.]</nowiki>
** Midpoint-between-mastoid-processes-MMP <nowiki>[The midpoint between the mastoid processes.]</nowiki>
** Nasion <nowiki>[The midpoint between the eyes just above the bridge of the nose.]</nowiki>
** Right-helix-tragus-junction-RHJ <nowiki>[The point where the helix meets the tragus of the right ear.]</nowiki>
** Vertex <nowiki>[The highest point on the head in the midline.]</nowiki>
* Lower-leg-landmark <nowiki>[Points on the lower leg used as reference landmarks.]</nowiki>
** Tibial-Tuberosity <nowiki>[The bony prominence on the tibia at the knee.]</nowiki>
* Thigh-landmark <nowiki>[Points on the thigh used as reference landmarks.]</nowiki>
** Femur-Lateral-Epicondyle-FLE <nowiki>[The lateral epicondyle of the femur.]</nowiki>
** Femur-Medial-Epicondyle-FME <nowiki>[The medial epicondyle of the femur.]</nowiki>
** Greater-Trochanter <nowiki>[The large prominence at the proximal end of the femur.]</nowiki>
* Torso-chest-landmark <nowiki>[Points on the chest used as reference landmarks.]</nowiki>
** Acromion-process <nowiki>[The outermost point of the shoulder blade.]</nowiki>
** Suprasternal-Notch-Jugular-Notch <nowiki>[The notch at the top of the sternum.]</nowiki>
** Vertebra-prominens-C7 <nowiki>[The seventh cervical vertebra at the base of the neck.]</nowiki>
** Xiphoid-process <nowiki>[The small cartilaginous process at the lower end of the sternum.]</nowiki>
* Upper-arm-landmark <nowiki>[Points on the upper arm used as reference landmarks.]</nowiki>
** Lateral-Humerus-Epicondyle-LHE <nowiki>[The lateral epicondyle of the humerus.]</nowiki>
** Medial-Humerus-Epicondyle-MHE <nowiki>[The medial epicondyle of the humerus.]</nowiki>

!# end schema
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201 changes: 201 additions & 0 deletions library_schemas/slam/prerelease/HED_slam_1.0.0.xml
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Expand Up @@ -1512,6 +1512,118 @@
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Abdomen-landmark</name>
<description>Points on the abdomen used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Anterior-Superior-Iliac-Spine-ASIS</name>
<description>The forwardmost point of the iliac crest.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Posterior-Superior-Iliac-Spine-PSIS</name>
<description>The rearmost point of the iliac crest.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Umbilicus</name>
<description>The navel or belly button.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Foot-landmark</name>
<description>Points on the foot used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Calcaneal-Tuberosity-CT</name>
<description>The bony prominence at the heel.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>First-Metatarsal-Head-FMH</name>
<description>The tip of the big toe.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Lateral-Malleolus-LM</name>
<description>The bony prominence on the lateral side of the ankle.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Medial-Malleolus-MM</name>
<description>The bony prominence on the medial side of the ankle.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Forearm-landmark</name>
<description>Points on the forearm used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Radial-Styloid-Process-RSP</name>
<description>The bony prominence on the radius bone at the wrist.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Ulnar-Styloid-Process-USP</name>
<description>The bony prominence on the ulna bone at the wrist.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Hand-landmark</name>
<description>Points on the hand used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Third-Metacarpophalangeal-Joint-MCP</name>
<description>The knuckle of the middle finger.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Head-landmark</name>
<description>Points on the head used as reference landmarks.</description>
Expand All @@ -1537,6 +1649,15 @@
</node>
<node>
<name>Mastoid-process</name>
<description>The process of the temporal bone behind the ear.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Midpoint-between-mastoid-processes-MMP</name>
<description>The midpoint between the mastoid processes.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
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</attribute>
</node>
</node>
<node>
<name>Lower-leg-landmark</name>
<description>Points on the lower leg used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Tibial-Tuberosity</name>
<description>The bony prominence on the tibia at the knee.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Thigh-landmark</name>
<description>Points on the thigh used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Femur-Lateral-Epicondyle-FLE</name>
<description>The lateral epicondyle of the femur.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Femur-Medial-Epicondyle-FME</name>
<description>The medial epicondyle of the femur.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Greater-Trochanter</name>
<description>The large prominence at the proximal end of the femur.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
<node>
<name>Torso-chest-landmark</name>
<description>Points on the chest used as reference landmarks.</description>
Expand All @@ -1582,6 +1751,14 @@
<value>slam</value>
</attribute>
</node>
<node>
<name>Suprasternal-Notch-Jugular-Notch</name>
<description>The notch at the top of the sternum.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Vertebra-prominens-C7</name>
<description>The seventh cervical vertebra at the base of the neck.</description>
Expand All @@ -1599,6 +1776,30 @@
</attribute>
</node>
</node>
<node>
<name>Upper-arm-landmark</name>
<description>Points on the upper arm used as reference landmarks.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
<node>
<name>Lateral-Humerus-Epicondyle-LHE</name>
<description>The lateral epicondyle of the humerus.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
<node>
<name>Medial-Humerus-Epicondyle-MHE</name>
<description>The medial epicondyle of the humerus.</description>
<attribute>
<name>inLibrary</name>
<value>slam</value>
</attribute>
</node>
</node>
</node>
<node>
<name>Body</name>
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39 changes: 32 additions & 7 deletions library_schemas/slam/prerelease/hedtsv/HED_slam_1.0.0/HED_slam_1.0.0_Tag.tsv
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@@ -1,13 +1,38 @@
hedId rdfs:label Level omn:SubClassOf Attributes dc:description omn:EquivalentTo Annotations
Anatomical-landmark 0 Anatomical-item rooted=Anatomical-item A collection of specific points on the human body used for anatomical and sensor placement reference. dc:source "Original", rdfs:comment "Body landmarks are used to standardize sensor placement.
Head-landmark 1 Anatomical-landmark Points on the head used as reference landmarks. dc:source "Original"
Anatomical-landmark 0 Anatomical-item rooted=Anatomical-item A collection of specific points on the human body used for anatomical and sensor placement reference.
Abdomen-landmark 1 Anatomical-landmark Points on the abdomen used as reference landmarks.
Anterior-Superior-Iliac-Spine-ASIS 2 Abdomen-landmark The forwardmost point of the iliac crest.
Posterior-Superior-Iliac-Spine-PSIS 2 Abdomen-landmark The rearmost point of the iliac crest.
Umbilicus 2 Abdomen-landmark The navel or belly button.
Foot-landmark 1 Anatomical-landmark Points on the foot used as reference landmarks.
Calcaneal-Tuberosity-CT 2 Foot-landmark The bony prominence at the heel.
First-Metatarsal-Head-FMH 2 Foot-landmark The tip of the big toe.
Lateral-Malleolus-LM 2 Foot-landmark The bony prominence on the lateral side of the ankle.
Medial-Malleolus-MM 2 Foot-landmark The bony prominence on the medial side of the ankle.
Forearm-landmark 1 Anatomical-landmark Points on the forearm used as reference landmarks.
Radial-Styloid-Process-RSP 2 Forearm-landmark The bony prominence on the radius bone at the wrist.
Ulnar-Styloid-Process-USP 2 Forearm-landmark The bony prominence on the ulna bone at the wrist.
Hand-landmark 1 Anatomical-landmark Points on the hand used as reference landmarks.
Third-Metacarpophalangeal-Joint-MCP 2 Hand-landmark The knuckle of the middle finger.
Head-landmark 1 Anatomical-landmark Points on the head used as reference landmarks.
Inion 2 Head-landmark The most prominent point of the occipital bone at the back of the head.
Left-helix-tragus-junction-LHJ 2 Head-landmark The point where the helix meets the tragus of the left ear.
Mastoid-process 2 Head-landmark dc:source "Original"
Mastoid-process 2 Head-landmark The process of the temporal bone behind the ear.
Midpoint-between-mastoid-processes-MMP 2 Head-landmark The midpoint between the mastoid processes.
Nasion 2 Head-landmark The midpoint between the eyes just above the bridge of the nose.
Right-helix-tragus-junction-RHJ 2 Head-landmark The point where the helix meets the tragus of the right ear.
Vertex 2 Head-landmark The highest point on the head in the midline.
Torso-chest-landmark 1 Anatomical-landmark Points on the chest used as reference landmarks. dc:source "Original"
Acromion-process 2 Torso-chest-landmark The outermost point of the shoulder blade. obo:has_dbxref "NCIT:C32048", obo:has_dbxref "FMA:12525", obo:has_dbxref "UBERON:0002497"
Vertebra-prominens-C7 2 Torso-chest-landmark The seventh cervical vertebra at the base of the neck. obo:has_dbxref "NCIT:C32245", obo:has_dbxref "FMA:23260", obo:has_dbxref "UBERON:0004616"
Xiphoid-process 2 Torso-chest-landmark The small cartilaginous process at the lower end of the sternum. obo:has_dbxref "NCIT:C33895", obo:has_dbxref "FMA:7488", obo:has_dbxref "UBERON:0002207"
Lower-leg-landmark 1 Anatomical-landmark Points on the lower leg used as reference landmarks.
Tibial-Tuberosity 2 Lower-leg-landmark The bony prominence on the tibia at the knee.
Thigh-landmark 1 Anatomical-landmark Points on the thigh used as reference landmarks.
Femur-Lateral-Epicondyle-FLE 2 Thigh-landmark The lateral epicondyle of the femur.
Femur-Medial-Epicondyle-FME 2 Thigh-landmark The medial epicondyle of the femur.
Greater-Trochanter 2 Thigh-landmark The large prominence at the proximal end of the femur.
Torso-chest-landmark 1 Anatomical-landmark Points on the chest used as reference landmarks.
Acromion-process 2 Torso-chest-landmark The outermost point of the shoulder blade.
Suprasternal-Notch-Jugular-Notch 2 Torso-chest-landmark The notch at the top of the sternum.
Vertebra-prominens-C7 2 Torso-chest-landmark The seventh cervical vertebra at the base of the neck.
Xiphoid-process 2 Torso-chest-landmark The small cartilaginous process at the lower end of the sternum.
Upper-arm-landmark 1 Anatomical-landmark Points on the upper arm used as reference landmarks.
Lateral-Humerus-Epicondyle-LHE 2 Upper-arm-landmark The lateral epicondyle of the humerus.
Medial-Humerus-Epicondyle-MHE 2 Upper-arm-landmark The medial epicondyle of the humerus.

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