Merge pull request #244 from VisLab/develop-score

Develop score made the necessary corrections

.github/workflows/pre_commit.yaml

@@ -1,8 +1,6 @@
 on:
   pull_request:
     types: [labeled, opened, reopened, synchronize]
-  push:
-    branches: ["develop*"]
 
 jobs:
   run-precommit:
@@ -31,4 +29,4 @@ jobs:
           pre-commit run --files ${{ steps.changed-files.outputs.all_changed_files }}
         else
           echo "No files have changed, skipping pre-commit."
-        fi
+        fi

library_schemas/score/prerelease/hedtsv/HED_score_2.0.0/HED_score_2.0.0_Structure.tsv

@@ -1,4 +1,4 @@
 hedId	rdfs:label	Attributes	omn:SubClassOf	dc:description	omn:EquivalentTo
-HED_0040010	ScoreHeader	"version=""2.0.0"", library=""score"", withStandard=""8.3.0"", unmerged=""True"""	HedHeader		"HedHeader and (inHedSchema some ScoreSchema) and (version value ""2.0.0"") and (library value ""score"") and (withStandard value ""8.3.0"") and (unmerged value ""True"")"
+HED_0040010	ScoreHeader	version="2.0.0", library="score", withStandard="8.3.0", unmerged="True"	HedHeader		HedHeader and (inHedSchema some ScoreSchema) and (version value "2.0.0") and (library value "score") and (withStandard value "8.3.0") and (unmerged value "True")
 HED_0040011	ScorePrologue		HedPrologue	This schema is a Hierarchical Event Descriptors (HED) Library Schema implementation of Standardized Computer-based Organized Reporting of EEG (SCORE)(1-2) for describing events occurring during neuroimaging time series recordings.\nThe HED-SCORE library schema allows cliniciand and scientists to annotate electrophysiology recordings using terms from an internationally accepted set of defined terms (SCORE) compatible with the HED framework .\nThe resulting annotations are understandable to clinicians and directly usable in computer analysis.\n\nFuture extensions may be implemented in the HED-SCORE library schema.\nFor more information see https://hed-schema-library.readthedocs.io/en/latest/index.html.	HedPrologue and (inHedSchema some ScoreSchema)
-HED_0040012	ScoreEpilogue		HedEpilogue	"The Standardized Computer-based Organized Reporting of EEG (SCORE) is a standard terminology for scalp EEG data assessment designed for use in clinical practice that may also be used for research purposes.\nThe SCORE standard defines terms for describing phenomena observed in scalp EEG data. It is also potentially applicable (with some suitable extensions) to EEG recorded in critical care and neonatal settings.\nThe SCORE standard received European consensus and has been endorsed by the European Chapter of the International Federation of Clinical Neurophysiology (IFCN) and the International League Against Epilepsy (ILAE) Commission on European Affairs.\nA second revised and extended version of SCORE achieved international consensus.\n\n1 Beniczky ea 2013: ""Standardized computer based organized reporting of EEG: SCORE."" Epilepsia 54(6) pp.1112-1124.\n2 Beniczky ea 2017: ""Standardized computer based organized reporting of EEG: SCORE second version."" Clinical Neurophysiology 128(11) pp.2334-2346.\n3 Hirsch ea 2013: ""American Clinical Neurophysiology Society's Standardized Critical Care EEG Terminology: 2012 version."" Journal of clinical neurophysiology 30(1) pp.1-27.\n4 Fisher ea 2017: ""Instruction manual for the ILAE 2017 operational classification of seizure types."" Epilepsia 58(4) pp.531-542.\n5 Trenité ea 2001: ""Visual sensitivity and epilepsy: a proposed terminology and classification for clinical and EEG phenomenology."" Epilepsia 42(5) pp.692-701.\n6 Blume ea 2001: ""Glossary of descriptive terminology for ictal semiology: report of the ILAE task force on classification and terminology."" Epilepsia 42(9) pp.1212-1218.\n\nTPA KR DH SM July 2024"	HedEpilogue and (inHedSchema some ScoreSchema)
+HED_0040012	ScoreEpilogue		HedEpilogue	The Standardized Computer-based Organized Reporting of EEG (SCORE) is a standard terminology for scalp EEG data assessment designed for use in clinical practice that may also be used for research purposes.\nThe SCORE standard defines terms for describing phenomena observed in scalp EEG data. It is also potentially applicable (with some suitable extensions) to EEG recorded in critical care and neonatal settings.\nThe SCORE standard received European consensus and has been endorsed by the European Chapter of the International Federation of Clinical Neurophysiology (IFCN) and the International League Against Epilepsy (ILAE) Commission on European Affairs.\nA second revised and extended version of SCORE achieved international consensus.\n\n1 Beniczky ea 2013: "Standardized computer based organized reporting of EEG: SCORE." Epilepsia 54(6) pp.1112-1124.\n2 Beniczky ea 2017: "Standardized computer based organized reporting of EEG: SCORE second version." Clinical Neurophysiology 128(11) pp.2334-2346.\n3 Hirsch ea 2013: "American Clinical Neurophysiology Society's Standardized Critical Care EEG Terminology: 2012 version." Journal of clinical neurophysiology 30(1) pp.1-27.\n4 Fisher ea 2017: "Instruction manual for the ILAE 2017 operational classification of seizure types." Epilepsia 58(4) pp.531-542.\n5 Trenité ea 2001: "Visual sensitivity and epilepsy: a proposed terminology and classification for clinical and EEG phenomenology." Epilepsia 42(5) pp.692-701.\n6 Blume ea 2001: "Glossary of descriptive terminology for ictal semiology: report of the ILAE task force on classification and terminology." Epilepsia 42(9) pp.1212-1218.\n\nTPA KR DH SM July 2024	HedEpilogue and (inHedSchema some ScoreSchema)

standard_schema/hedtsv/HED8.3.0/HED8.3.0_Structure.tsv

@@ -1,4 +1,4 @@
 hedId	rdfs:label	Attributes	omn:SubClassOf	dc:description
-HED_0010010	StandardHeader	"version=""8.3.0"", xmlns:xsi=""http://www.w3.org/2001/XMLSchema-instance"", xsi:noNamespaceSchemaLocation=""https://github.com/hed-standard/hed-specification/raw/master/hedxml/HED8.0.0.xsd"""	HedHeader	
+HED_0010010	StandardHeader	version="8.3.0", xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance", xsi:noNamespaceSchemaLocation="https://github.com/hed-standard/hed-specification/raw/master/hedxml/HED8.0.0.xsd"	HedHeader
 HED_0010011	StandardPrologue		HedPrologue	The HED standard schema is a hierarchically-organized vocabulary for annotating events and experimental structure. HED annotations consist of comma-separated tags drawn from this vocabulary. This vocabulary can be augmented by terms drawn from specialized library schema. \n\nEach term in this vocabulary has a human-readable description and may include additional attributes that give additional properties or that specify how tools should treat the tag during analysis. The meaning of these attributes is described in the Additional schema properties section.
 HED_0010012	StandardEpilogue		HedEpilogue	This schema is released under the Creative Commons Attribution 4.0 International and is a product of the HED Working Group. The DOI for the latest version of the HED standard schema is 10.5281/zenodo.7876037.

standard_schema/hedtsv/HED8.3.0/HED8.3.0_Tag.tsv

@@ -227,7 +227,7 @@ HED_0013217	Pelvis	5	Torso-part		The bony structure at the base of the spine sup
 HED_0013218	Pelvis-part	5	Torso-part		A part of the pelvis.	
 HED_0012208	Buttocks	6	Pelvis-part		The round fleshy parts that form the lower rear area of a human trunk.	
 HED_0013219	Genitalia	6	Pelvis-part		The external organs of reproduction and urination, located in the pelvic region. This includes both male and female genital structures.	
-HED_0012209	Gentalia	6	Pelvis-part	deprecatedFrom=8.1.0	The external organs of reproduction. Deprecated due to spelling error. Use Genitalia.	"Pelvis-part and (deprecatedFrom value ""8.1.0"")"
+HED_0012209	Gentalia	6	Pelvis-part	deprecatedFrom=8.1.0	The external organs of reproduction. Deprecated due to spelling error. Use Genitalia.	Pelvis-part and (deprecatedFrom value "8.1.0")
 HED_0012210	Hip	6	Pelvis-part		The lateral prominence of the pelvis from the waist to the thigh.	
 HED_0012211	Torso-back	5	Torso-part		The rear surface of the human body from the shoulders to the hips.	
 HED_0012212	Torso-chest	5	Torso-part		The anterior side of the thorax from the neck to the abdomen.	
@@ -690,8 +690,8 @@ HED_0012661	Angle-#	6	Angle	takesValue, unitClass=angleUnits, valueClass=numeric
 HED_0012662	Distance	5	Spatial-value		A measure of the space separating two objects or points.	
 HED_0012663	Distance-#	6	Distance	takesValue, valueClass=numericClass, unitClass=physicalLengthUnits		Distance and (valueClass some numericClass) and (unitClass some physicalLengthUnits)
 HED_0012664	Position	5	Spatial-value		A reference to the alignment of an object, a particular situation or view of a situation, or the location of an object. Coordinates with respect a specified frame of reference or the default Screen-frame if no frame is given.	
-HED_0012326	Clock-face	6	Position	deprecatedFrom=8.2.0	A location identifier based on clock-face numbering or anatomic subregion. Replaced by Clock-face-position.	"Position and (deprecatedFrom value ""8.2.0"")"
-HED_0013228	Clock-face-#	7	Clock-face	deprecatedFrom=8.2.0, takesValue, valueClass=numericClass		"Clock-face and (deprecatedFrom value ""8.2.0"") and (valueClass some numericClass)"
+HED_0012326	Clock-face	6	Position	deprecatedFrom=8.2.0	A location identifier based on clock-face numbering or anatomic subregion. Replaced by Clock-face-position.	Position and (deprecatedFrom value "8.2.0")
+HED_0013228	Clock-face-#	7	Clock-face	deprecatedFrom=8.2.0, takesValue, valueClass=numericClass		Clock-face and (deprecatedFrom value "8.2.0") and (valueClass some numericClass)
 HED_0013229	Clock-face-position	6	Position		A location identifier based on clock-face numbering or anatomic subregion. As an object, just use the tag Clock.	
 HED_0013230	Clock-face-position-#	7	Clock-face-position	takesValue, valueClass=numericClass		Clock-face-position and (valueClass some numericClass)
 HED_0012665	X-position	6	Position		The position along the x-axis of the frame of reference.