Contains a proof-of-concepts for wrapping R scripts with Python.
Install R packages
Rscript -e 'install.packages("jsonlite", repos="https://cloud.r-project.org")'
Rscript -e 'install.packages("arrow", repos="https://cloud.r-project.org")'
Run python script
python <SCRIPT>
log.py- structured loggingerror.py- error handling and exitingdata.py- loading data into memory and using it between processesepiline.py- wrapping a script
The team selected the EpiLine package for testing an integration beyond spikes. Installation using the included install_epiline.sh script currently fails at the last step, due to an outstanding issue with three files. See this issue for a description and workaround.