GEOS-Chem submodule update: Add fixes for transport tracer simulation #299
Workflow file for this run
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| # Release pipeline: | |
| # | |
| # This pipeline triggers the cloud-based benchmarking workflow | |
| # upon pushes to the dev environment. The benchmarking workflow | |
| # infrastructure code can be found in the following repository: | |
| # https://github.com/geoschem/gc-cloud-infrastructure | |
| # | |
| # This pipeline is triggered by pushes to dev | |
| # | |
| # Notes: | |
| # - This workflow requires aws credentials necessary to | |
| # trigger the benchmarking step function via the aws cli. | |
| # The credentials need step function permissions and can | |
| # be added to the repo as an action secret called | |
| # AWS_SECRET_ACCESS_KEY and AWS_ACCESS_KEY_ID. | |
| name: cloud_benchmarking | |
| on: | |
| push: | |
| branches: | |
| - dev** | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - dev** | |
| jobs: | |
| trigger_step_function: | |
| runs-on: ubuntu-latest # aws cli comes pre-installed | |
| steps: | |
| # for now both use Spot instances -- may need to update to use on demand | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set Initial Variables | |
| # By default we use 1Hr benchmarks | |
| run: | | |
| echo "TIME_PERIOD=1Hr" >> $GITHUB_ENV | |
| echo "RESOLUTION=24" >> $GITHUB_ENV | |
| echo "GITHUB_SHA_SHORT=`echo ${GITHUB_SHA} | cut -c1-7`" >> $GITHUB_ENV | |
| echo "COMMIT_NAME=`echo ${GITHUB_SHA} | cut -c1-7`" >> $GITHUB_ENV | |
| # conditionally overwrite variables if a tag was the triggering event | |
| - name: Reset Initial Variables for pull request | |
| run: | | |
| echo "GITHUB_SHA_SHORT=`echo ${{ github.event.pull_request.head.sha }} | cut -c1-7`" >> $GITHUB_ENV | |
| echo "COMMIT_NAME=`echo ${{ github.event.pull_request.head.sha }} | cut -c1-7`" >> $GITHUB_ENV | |
| if: github.event_name == 'pull_request' | |
| - name: Reset Variables For Tags | |
| # We do a 1Month benchmark for tags | |
| run: | | |
| echo "TIME_PERIOD=1Mon" >> $GITHUB_ENV | |
| echo "COMMIT_NAME=${GITHUB_REF##*/}" >> $GITHUB_ENV | |
| if: startsWith(github.ref, 'refs/tags/') | |
| - name: Generate Primary Key | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-1 | |
| AWS_DEFAULT_OUTPUT: json | |
| run: | | |
| cd ${{ github.workspace }} | |
| echo "DEV_PRIMARY_KEY=gchp-c${RESOLUTION}-${TIME_PERIOD}-`git describe --tags`" >> $GITHUB_ENV | |
| echo "REF_PRIMARY_KEY=`./.github/workflows/findRefKey.sh ${RESOLUTION} ${TIME_PERIOD} ${GITHUB_SHA}`" >> $GITHUB_ENV | |
| - name: Trigger Step Function | |
| env: | |
| # Set config options for aws cli | |
| NUM_CORES: 62 | |
| EC2_TYPE: SPOT # SPOT or DEMAND | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-1 | |
| AWS_DEFAULT_OUTPUT: json | |
| # Note the step function input is sent in as a single json string | |
| run: | | |
| export WORKFLOW_ARN=`aws stepfunctions list-state-machines --output json \ | |
| | jq -r '.stateMachines[] | select(.name == "benchmarks-cloud-workflow").stateMachineArn'` | |
| aws stepfunctions start-execution \ | |
| --name ${DEV_PRIMARY_KEY} \ | |
| --state-machine-arn ${WORKFLOW_ARN} \ | |
| --input "{\"event\": {"` | |
| `"\"nameSuffix\": \"${GITHUB_SHA_SHORT}\","` | |
| `"\"primaryKey\": \"${DEV_PRIMARY_KEY}\","` | |
| `"\"simulationType\": \"gchp\","` | |
| `"\"runType\": \"${EC2_TYPE}\","` | |
| `"\"timePeriod\": \"${TIME_PERIOD}\","` | |
| `"\"tag\": \"${COMMIT_NAME}\","` | |
| `"\"numCores\": \"${NUM_CORES}\","` | |
| `"\"memory\": \"80000\","` | |
| `"\"resolution\": \"${RESOLUTION}\","` | |
| `"\"sendEmailNotification\": \"true\""` | |
| `"},"` | |
| `"\"plotting\": {"` | |
| `"\"devPrimaryKey\": \"${DEV_PRIMARY_KEY}\","` | |
| `"\"refPrimaryKey\": \"${REF_PRIMARY_KEY}\""` | |
| `"}}" |