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Add memory #412

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merged 2 commits into from
Sep 2, 2020
Merged

Add memory #412

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ff5876a
job_defaults.cfg: add memory for run_15
mirzaees Sep 2, 2020
52402cd
job_submission.py: modify memory limit
mirzaees Sep 2, 2020
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2 changes: 1 addition & 1 deletion minsar/defaults/job_defaults.cfg
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Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ extract_stack_valid_region 0 00:01:00 4000 0
merge_reference_secondary_slc 00:02:45 0 4000 0 2
generate_burst_igram 0 00:00:30 4000 0 2
merge_burst_igram 0 00:00:10 4000 0 8 # for num_threads=4 got error with memory
filter_coherence 0 00:00:40 6000 0 8 # for num_threads=4 got error with memory
filter_coherence 0 00:00:40 6000 1000 8 # for num_threads=4 got error with memory
unwrap 0 00:01:00 5000 0 2
merge 00:02:45 0 4000 0 2

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9 changes: 7 additions & 2 deletions minsar/job_submission.py
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Expand Up @@ -440,10 +440,15 @@ def split_jobs(self, batch_file, tasks, number_of_nodes):
number_of_parallel_tasks = int(np.ceil(len(tasks) / number_of_jobs))
number_of_limited_memory_tasks = int(self.max_memory_per_node*number_of_nodes_per_job/self.default_memory)

while number_of_limited_memory_tasks < number_of_parallel_tasks:
if number_of_jobs < int(self.max_jobs_per_queue):
number_of_jobs += 1
number_of_parallel_tasks = int(np.ceil(len(tasks) / number_of_jobs))
else:
break

while number_of_limited_memory_tasks < number_of_parallel_tasks:
number_of_nodes_per_job = number_of_nodes_per_job + 1
number_of_jobs = np.ceil(number_of_nodes / number_of_nodes_per_job)
number_of_parallel_tasks = int(np.ceil(len(tasks) / number_of_jobs))
number_of_limited_memory_tasks = int(self.max_memory_per_node * number_of_nodes_per_job / self.default_memory)

if number_of_nodes_per_job > 1:
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