prod tangram

build.xml

@@ -6,7 +6,7 @@
 <target name="create-zip" depends="init">
     <antcall target="prezip"/>
     <zip destfile="${dest.dir}/${ant.project.name}.zip" whenempty="fail" defaultexcludes="true">
-        <fileset dir="." includes="manifest, Dockerfile"/>
+        <fileset dir="." includes="manifest, Dockerfile, paramgroups.json"/>
         <!-- if you are iterating in the module integrator you will need to include the source files in the module zip -->
         <!-- zipfileset dir="src" includes="*.py"/-->
     </zip>

manifest

@@ -1,7 +1,7 @@
 #Tangram
 #Wed Oct 09 21:09:22 UTC 2024
 JVMLevel=
-LSID=urn\:lsid\:8080.gpserver.ip-172-31-26-71.ip-172-31-26-71.ec2.internal\:genepatternmodules\:749\:2.0.29
+LSID=urn\:lsid\:genepattern.org\:module.analysis\:00463\:1
 author=Julia Kononova, Omar Halawa - GenePattern;GenePattern @ Mesirov Lab, UCSD
 categories=single-cell;singlecell;spatial analysis
 commandLine=python /Tangram/main.py <single.cell.data.file> <cell.type.metadata.field> <spatial.data.file> <cluster.metadata.field> <histological.image.file> <img.metadata.field> <output.file.tag> <classification.mode> <cross.val.mode> <training.mode> <num.top.DE.genes> <training.genes.input> <alignment.mode> <alignment.cell.density> <num.epochs> <spot.size> <scale.factor> <spatial.opacity> <training.opacity> <testing.opacity> <training.bin.num> <testing.bin.num> <color.mapping.perc> <debug> <verbose> <genes.to.plot.data.file> --device "cpu" <deconv.opacity> <deconv.point.size>
@@ -416,7 +416,7 @@ p9_type=java.lang.String
 p9_userSuppliedValuesOK=False
 p9_value=Top N Genes\=Top N Genes;GMT File Input\=GMT File Input;All Genes\=All Genes
 privacy=public
-quality=development
+quality=production
 src.repo=https\://github.com/genepattern/Tangram
 taskDoc=
 taskType=single-cell