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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts imagej-scripts Public

    Python 1

Repositories

Showing 10 of 51 repositories
  • napari-save-transformed Public

    Save image layers with their transformation applied

    fmi-faim/napari-save-transformed’s past year of commit activity
    Python 2 BSD-3-Clause 0 2 0 Updated Dec 25, 2024
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    fmi-faim/faim-ipa’s past year of commit activity
    Python 9 BSD-3-Clause 6 15 1 Updated Dec 25, 2024
  • fmi-trackmate-addons Public

    Addons for TrackMate in ImageJ

    fmi-faim/fmi-trackmate-addons’s past year of commit activity
    Java 0 GPL-3.0 2 1 0 Updated Dec 14, 2024
  • diy-tools Public
    fmi-faim/diy-tools’s past year of commit activity
    0 BSD-3-Clause 1 0 0 Updated Dec 12, 2024
  • metamorph-mda-parser Public

    Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

    fmi-faim/metamorph-mda-parser’s past year of commit activity
    Python 0 BSD-3-Clause 0 3 0 Updated Dec 11, 2024
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    fmi-faim/faim-wako-searchfirst’s past year of commit activity
    Python 1 MIT 1 8 4 Updated Dec 2, 2024
  • example-project Public
    fmi-faim/example-project’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 1 Updated Dec 2, 2024
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    fmi-faim/ipa-project-template’s past year of commit activity
    Jinja 4 MIT 2 3 (1 issue needs help) 2 Updated Dec 2, 2024
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    fmi-faim/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,057 0 0 Updated Nov 25, 2024
  • ngff Public Forked from ome/ngff

    Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

    fmi-faim/ngff’s past year of commit activity
    Bikeshed 0 42 0 0 Updated Nov 21, 2024
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