* first bakta addition test

* Fixing error when phigaro output was empty (#55) (#56)

* adding checkIfExists rules to input loading

* Update build.sh

* fixed report if else statement

* updated version and changelog

* fix example samplesheet url

* Create nf-core-bacannot-compare_logo_dark.png

* Update phigaro.nf

* Update CHANGELOG.md

* Update CHANGELOG.md

* Update .gitignore

* Update bacannot.nf

* workflow runs from top to bottom

* workflow correctly working

* changing version manifest

* explaining how to use bakta

* adding variables to generic annotation

* adding victors backup db

* report_general understands bakta

* report_resistance understands bakta

* update hmmer to working version with PGAP

* update hmmer to working version with PGAP (#59)

* update hmmer to working version with PGAP (#59) (#60)

* Update resfinder2gff.py

* Update addBedtoolsIntersect.R

* Update addBedtoolsIntersect.R

* Update addBedtoolsIntersect.R

* Update addBedtoolsIntersect.R

* Update docker.config

* download db if not available

* Update merge_annotations.nf

* Update merge_annotations.nf

* update process label

* Update merge_annotations.nf

* fix docker file ownerships

* added retry label for bakta