it fails to publish, lets resume

fmalmeida · Mar 9, 2024 · 80d34ab · 80d34ab
1 parent 696ab30
commit 80d34ab
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/.github/workflows/test_pr_docker.yml b/.github/workflows/test_pr_docker.yml
@@ -28,13 +28,15 @@ jobs:
 
  - name: Get database
  run: |
- nextflow run main.nf -profile docker --get_zenodo_db --output ./zenodo_db --max_memory '6.GB' --max_cpus 2
+ nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2
+ nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume
+ nextflow run main.nf -profile docker --get_zenodo_db --output ./ --max_memory '6.GB' --max_cpus 2 -resume
  sudo rm -r work .nextflow*
  yes | docker system prune
 
  - name: Run quicktest profile
  run: |
- nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./zenodo_db/bac* ) --output ./results --max_memory '6.GB' --max_cpus 2
+ nextflow run main.nf -profile docker,quicktest --bacannot_db $( realpath ./bac* ) --output ./results --max_memory '6.GB' --max_cpus 2
  sudo rm -r work .nextflow*
  yes | docker system prune