Entity Mention Linker #2097
Annotations
2 errors and 1 warning
test:
flair/datasets/entity_linking.py#L345
ruff
pytest_ruff.RuffError: flair/datasets/entity_linking.py:2220:5: D415 First line should end with a period, question mark, or exclamation point
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2218 | # TODO: Adapt this following: https://github.com/flairNLP/flair/pull/3146
2219 | class BigBioEntityLinkingCorpus(Corpus, abc.ABC):
2220 | """This class implements an adapter to data sets implemented in the BigBio framework:
| _____^
2221 | |
2222 | | https://github.com/bigscience-workshop/biomedical
2223 | |
2224 | | The BigBio framework harmonizes over 120 biomedical data sets and provides a uniform
2225 | | programming api to access them. This adapter allows to use all named entity recognition
2226 | | data sets by using the bigbio_kb schema.
2227 | | """
| |_______^ D415
2228 |
2229 | def __init__(
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= help: Add closing punctuation
flair/datasets/entity_linking.py:2340:5: D415 First line should end with a period, question mark, or exclamation point
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2339 | class BIGBIO_NCBI_DISEASE(BigBioEntityLinkingCorpus):
2340 | """This class implents the adapter for the NCBI Disease corpus:
| _____^
2341 | |
2342 | | - Reference: https://www.sciencedirect.com/science/article/pii/S1532046413001974
2343 | | - Link: https://www.ncbi.nlm.nih.gov/CBBresearch/Dogan/DISEASE/
2344 | | """
| |_______^ D415
2345 |
2346 | def __init__(self, base_path: Optional[Union[str, Path]] = None, label_type: str = "el-diseases", **kwargs) -> None:
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= help: Add closing punctuation
flair/datasets/entity_linking.py:2441:5: D415 First line should end with a period, question mark, or exclamation point
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2440 | class BIGBIO_BC5CDR_CHEMICAL(BigBioEntityLinkingCorpus):
2441 | """This class implents the adapter for the BC5CDR corpus (only chemical annotations):
| _____^
2442 | |
2443 | | - Reference: https://academic.oup.com/database/article/doi/10.1093/database/baw068/2630414
2444 | | - Link: https://biocreative.bioinformatics.udel.edu/tasks/biocreative-v/track-3-cdr/
2445 | | """
| |_______^ D415
2446 |
2447 | def __init__(self, base_path: Optional[Union[str, Path]] = None, label_type: str = "el-chemical", **kwargs) -> None:
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= help: Add closing punctuation
flair/datasets/entity_linking.py:2532:5: D415 First line should end with a period, question mark, or exclamation point
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2531 | class BIGBIO_GNORMPLUS(BigBioEntityLinkingCorpus):
2532 | """This class implents the adapter for the GNormPlus corpus:
| _____^
2533 | |
2534 | | - Reference: https://www.hindawi.com/journals/bmri/2015/918710/
2535 | | - Link: https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/gnormplus/
2536 | | """
| |_______^ D415
2537 |
2538 | def __init__(self, base_path: Optional[Union[str, Path]] = None, label_type: str = "el-genes", **kwargs) -> None:
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= help: Add closing punctuation
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test
Process completed with exit code 1.
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test
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