Pymol-Ramachandran

A simple script to generate a Ramachandran plot from structures within pymol.

Over is an example of the generated ramachandran plot using the Yeast TFIIH structure from PDB.

Installation / How-to-use

1. Download the repository to your computer. Store the code in $pwd (preferred). Find this directory by running,

PyMOL> pwd

The repository can be downloaded either using Git or Download ZIP directly in Github. Using git this can be done using

$ git clone https://github.com/exTerEX/pymol-ramachandran.git /path/to/pwd

2. Run script in pymol (example assume script is in $pwd)

$ run ramachandran.py

3. Generatet a Ramachandran plot. Fetch one or more structures in pymol and run

$ ramaplot()

or specify which model/residues to be used to generate the plot

$ ramaplot(model="(pdb-id)", resn="(residue)")

or use multiple models/residues

$ ramaplot(model=["(pdb-id)", "(pdb-id)", ...], resn=["(residue)", "(residue)", ...])

License

This project is licensed under ECL-2.0. See LICENSE for more information.