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1. sbmlteam/jsbml sbmlteam/jsbml Public

   JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is…

   Java 37 24

2. draeger-lab/KEGGtranslator draeger-lab/KEGGtranslator Public

   A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.

   Java 18 12

3. funasoul/celldesigner-parser funasoul/celldesigner-parser Public

   Parse CellDesigner annotations from SBML.

   Java 4 2

4. draeger-lab/SBSCL draeger-lab/SBSCL Public

   The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Lang…

   HTML 20 13

5. draeger-lab/ModelPolisher draeger-lab/ModelPolisher Public

   ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.

   Java 23 7

6. draeger-lab/EscherConverter draeger-lab/EscherConverter Public

   A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

   Java 15 10