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1. deeptools/deepTools deeptools/deepTools Public

   Tools to process and analyze deep sequencing data.

   Python 691 212

2. ChromosomeMappings ChromosomeMappings Public

   This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

   237 59

3. deeptools/pyBigWig deeptools/pyBigWig Public

   A python extension for quick access to bigWig and bigBed files

   C 221 50

4. libBigWig libBigWig Public

   A C library for handling bigWig files

   C 76 25

5. MethylDackel MethylDackel Public

   A (mostly) universal methylation extractor for BS-seq experiments.

   C 167 43

6. bison bison Public

   Bisulfite alignment on nodes of a cluster

   C 9 2