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GLNexus CLI List/Manifest issue using -l

Status: Open.

#324 In dnanexus-rnd/GLnexus;

· lmajeres opened on Jul 24, 2025

merging UKB DRAGEN SV gvcf: which source configuration to choose?

Status: Open.

#323 In dnanexus-rnd/GLnexus;

· WeiCSong opened on Jul 21, 2025

Error with gatk 4.6.0.0 gvcf

Status: Open.

#322 In dnanexus-rnd/GLnexus;

· fsandron opened on May 21, 2025

About QC metrics during gVCF merging

Status: Open.

#321 In dnanexus-rnd/GLnexus;

· taejun12 opened on Mar 10, 2025

Generation of allsites vcf from joint-genotyped samples

Status: Open.

#320 In dnanexus-rnd/GLnexus;

· echille opened on Dec 20, 2024

building failed

Status: Open.

#319 In dnanexus-rnd/GLnexus;

· bcantarel opened on Dec 6, 2024

Missing calls overlapping RefCall/null-GT gVCF records

Status: Open.

#317 In dnanexus-rnd/GLnexus;

· DavidStreid opened on Dec 4, 2024

calling haploid chromosomes

Status: Open.

#316 In dnanexus-rnd/GLnexus;

· splaisan opened on Nov 14, 2024

This image on your wiki has a transparent background and is unreadable in dark mode

Status: Open.

#315 In dnanexus-rnd/GLnexus;

· dvg-p4 opened on Nov 12, 2024

Allele Specific QC filtering at multi-allelic sites

Status: Open.

#314 In dnanexus-rnd/GLnexus;

· jjfarrell opened on Sep 26, 2024

Inquiry Regarding IOError Encountered During Multiple Rounds of Merging gVCF Files Using GLnexus

Status: Open.

#313 In dnanexus-rnd/GLnexus;

· zhanxiangzong opened on Jul 4, 2024

Merging vcf files error with glnexus:v1.2.7

Status: Open.

#312 In dnanexus-rnd/GLnexus;

· poddarharsh15 opened on May 7, 2024