[GraphBolt][Dataset] Contribute IGBH dataset to hetero examples. #7708

BowenYao18 · 2024-08-15T20:36:54Z

Description

I added IGB-dataset to the RGCN folder. Currently the three smaller version (tiny[~2GB], small[~20GB], medium[~100GB]) are supported. The two larger versions (large[~800GB], full[~2.2TB]) are still under test.

Usage:

Run the "download.py --size {choose the size}", the dataset will be downloaded and processed under the default ""dataset/"" folder
Run the ""hetero_rgcn.py"" with the corresponding dataset you just processed

Checklist

Please feel free to remove inapplicable items for your PR.

The PR title starts with [$CATEGORY] (such as [NN], [Model], [Doc], [Feature]])
I've leverage the tools to beautify the python and c++ code.
[] The PR is complete and small, read the Google eng practice (CL equals to PR) to understand more about small PR. In DGL, we consider PRs with less than 200 lines of core code change are small (example, test and documentation could be exempted).
All changes have test coverage
Code is well-documented
To the best of my knowledge, examples are either not affected by this change, or have been fixed to be compatible with this change
Related issue is referred in this PR
If the PR is for a new model/paper, I've updated the example index here.

Changes

dgl-bot · 2024-08-15T20:37:24Z

To trigger regression tests:

@dgl-bot run [instance-type] [which tests] [compare-with-branch];
For example: @dgl-bot run g4dn.4xlarge all dmlc/master or @dgl-bot run c5.9xlarge kernel,api dmlc/master

dgl-bot · 2024-08-15T20:41:19Z

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examples/graphbolt/rgcn/download.py

dgl-bot · 2024-08-15T21:18:44Z

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examples/graphbolt/rgcn/download.py

Co-authored-by: Muhammed Fatih BALIN <[email protected]>

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examples/graphbolt/rgcn/download.py

Co-authored-by: Muhammed Fatih BALIN <[email protected]>

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examples/graphbolt/pyg/hetero/node_classification.py

mfbalin · 2024-10-17T01:13:31Z

examples/graphbolt/rgcn/evaluator.py

We don't need this file. The same functionality can be implemented in a few lines.

mfbalin · 2024-10-17T01:14:01Z

examples/graphbolt/rgcn/hetero_rgcn.py

+            "igb-het-medium",
+            "igb-het-large",
+            "igb-het",
+            "igb-het-MLPerf",


Can we make it all lower case?

python/dgl/graphbolt/impl/ondisk_dataset.py

mfbalin · 2024-10-17T01:14:35Z

python/dgl/graphbolt/impl/ondisk_dataset.py

        The igb-hom-[tiny|small|medium] dataset is a heterogeneous citation network,
        which is designed for developers to train and evaluate GNN models with
-        high fidelity. See more details in `igb-het-[tiny|small|medium]
+        high fidelity. See more details in `igb-het-[tiny|small|medium|large]


also here as well. igb-het-[tiny|small|medium|large|mlperf] and igb-het.

dgl-bot · 2024-10-18T02:29:26Z

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dgl-bot · 2024-10-18T02:36:37Z

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mfbalin · 2024-10-19T21:40:52Z

LGTM except for the overly complicated evaluator.py file.

mfbalin · 2024-10-28T18:39:08Z

examples/graphbolt/rgcn/evaluator.py

Let's use pure pytorch operations to compute the evaluation score.

Ubuntu and others added 5 commits August 15, 2024 10:14

contribute three IGB dataset (small version)

6441133

Merge branch 'dmlc:master' into add-igbh-to-rgcn

abb9f39

contribute three IGB dataset (small version)

85d92c8

contribute three IGB dataset (small version)

5d2fe56

format the code with ufmt

543f672

added documentation

6bf10cb

Merge branch 'dmlc:master' into add-igbh-to-rgcn

5fc930b

mfbalin reviewed Aug 15, 2024

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BowenYao18 and others added 4 commits August 15, 2024 15:01

Update examples/graphbolt/rgcn/download.py

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Co-authored-by: Muhammed Fatih BALIN <[email protected]>

Update examples/graphbolt/rgcn/download.py

06f3f29

Co-authored-by: Muhammed Fatih BALIN <[email protected]>

Update examples/graphbolt/rgcn/download.py

19f18a5

Co-authored-by: Muhammed Fatih BALIN <[email protected]>

Update examples/graphbolt/rgcn/download.py

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Co-authored-by: Muhammed Fatih BALIN <[email protected]>

Ubuntu added 2 commits August 15, 2024 22:35

added 2983 class task

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fix lint

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remove labels from yaml

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BowenYao18 added 2 commits September 9, 2024 08:38

add igb-het-large

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fix format

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fix lint

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Merge branch 'dmlc:master' into add-igbh-to-rgcn

de7dc90

Merge branch 'dmlc:master' into add-igbh-to-rgcn

2537811

BowenYao18 added 2 commits October 9, 2024 02:27

fix acc drop bug

692912e

fix acc drop bug

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We don't need this file. The same functionality can be implemented in a few lines.

mfbalin reviewed Oct 17, 2024

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BowenYao18 and others added 2 commits October 17, 2024 21:19

Update node_classification.py

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add dataset name

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fix lint

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change mlperf to lower

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Ubuntu added 2 commits October 23, 2024 03:38

reduce evaluator

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Let's use pure pytorch operations to compute the evaluation score.

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[GraphBolt][Dataset] Contribute IGBH dataset to hetero examples. #7708

[GraphBolt][Dataset] Contribute IGBH dataset to hetero examples. #7708

BowenYao18 commented Aug 15, 2024 •

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[GraphBolt][Dataset] Contribute IGBH dataset to hetero examples. #7708

Are you sure you want to change the base?

[GraphBolt][Dataset] Contribute IGBH dataset to hetero examples. #7708

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BowenYao18 commented Aug 15, 2024 • edited Loading

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