[WIP] adding gzip functionality #27
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ctb
reviewed
Aug 9, 2025
| @@ -328,7 +335,11 @@ def pangenome_createdb_main(args): | |||
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| # Chunk function to limit the memory used by the hash_count dict and list | |||
| def write_chunk(chunk, output_file): | |||
| with open(output_file, "a", newline="") as csvfile: | |||
| if output_file.endswith('.gz'): | |||
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this looks good - not sure you need the --gzip option after all? It doesn't seem to add much :).
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I am making a bunch of ranktables and wanted them compressed to save on diskspace...