Search results

–regionsFileName Dear Professor

Status: Open.

#1417 In deeptools/deepTools;

· helloworldABCD1234 opened on Aug 30, 2025

bamCoverage with DNAse-seq shift

Status: Open.

#1415 In deeptools/deepTools;

· JavierMenRev opened on Aug 22, 2025

reference-point and scale-regions plots vary near the TSS

Status: Open.

#1413 In deeptools/deepTools;

· Hemantcnaik opened on Jul 25, 2025

computeMatrix scale-regions A region that is shorter than the bin size

Status: Open.

#1411 In deeptools/deepTools;

· sunta3iouxos opened on Jul 15, 2025

plotFingerprint results depend on BAM file order — input sorting needed

Status: Open.

#1410 In deeptools/deepTools;

· QuentinDuvertCurie opened on Jul 15, 2025

Add a param in plotHeatmap to choose the color of the summary profile

Status: Open.

#1409 In deeptools/deepTools;

· lldelisle opened on Jul 8, 2025

some blank regions show in the plotHeatmap plot

Status: Open.

#1407 In deeptools/deepTools;

· wddyzxxx opened on Jul 4, 2025

Help interpreting these heatmaps/profiles

Status: Open.

#1405 In deeptools/deepTools;

· pterzian opened on Jun 16, 2025

RPGC normalization (--normalizeUsing RPGC) is not supported with bamCompare!

Status: Open.

#1404 In deeptools/deepTools;

· ps-puneetsharma opened on May 28, 2025

The enrichment of signal values near the TSS on the sense and antisense strands

Status: Open.

#1403 In deeptools/deepTools;

· yfZhang99 opened on May 16, 2025

heatmap appears just dark but plot profiles look great

Status: Open.

#1402 In deeptools/deepTools;

· sahuno opened on May 9, 2025

how to recenter diverging color scheme

Status: Open.

#1400 In deeptools/deepTools;

· jayoung opened on May 5, 2025