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@csf-ngs

VBCF NGS

Vienna Biocenter Core Sequencing Facility

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  1. fastqc fastqc Public

    csf fork of fastqc for usage on selected reads of unaligned bam file

    Java 48 43

  2. illuminasavr illuminasavr Public

    Parses and Plots Illumina SAV files

    JavaScript 13 1

  3. hinkskalle hinkskalle Public

    OCI + Singularity Container Registry

    Python 8 1

  4. illuminaBackup illuminaBackup Public

    small backup program that copies the important files from illumina sequencing runs

    Scala 2 1

  5. bam2fq bam2fq Public

    bam to fastq converter ui

    Java 1

  6. forskaller forskaller Public

    simple small API for our superior in house LIMS built by Heinz

    R 1

Repositories

Showing 10 of 19 repositories
  • controldna Public

    is a bioinformatics best-practice analysis pipeline for alignment for our control DNA

    csf-ngs/controldna’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 13, 2023
  • hinkskalle Public

    OCI + Singularity Container Registry

    csf-ngs/hinkskalle’s past year of commit activity
    Python 8 MIT 1 10 1 Updated Jan 25, 2023
  • hinkskalle-dev Public

    Development Container for Hinkskalle

    csf-ngs/hinkskalle-dev’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Oct 17, 2022
  • forskalle-api Public

    Command Line Interface and Python API for Forskalle

    csf-ngs/forskalle-api’s past year of commit activity
    Python 0 0 0 0 Updated May 17, 2022
  • hinkskalle-api Public

    Talking to Hinkskalle

    csf-ngs/hinkskalle-api’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 6, 2022
  • swagspotta Public

    Generate typescript + python classes from Swagger/OpenAPI 2 definitions

    csf-ngs/swagspotta’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 25, 2022
  • forskaller Public

    simple small API for our superior in house LIMS built by Heinz

    csf-ngs/forskaller’s past year of commit activity
    R 1 GPL-2.0 0 0 0 Updated Apr 24, 2022
  • rnaseq Public Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    csf-ngs/rnaseq’s past year of commit activity
    Nextflow 0 MIT 676 0 0 Updated May 13, 2021
  • SQANTI2 Public Forked from Magdoll/SQANTI2

    Private repo for Liz's modified SQANTI

    csf-ngs/SQANTI2’s past year of commit activity
    Python 0 15 0 0 Updated Apr 8, 2019
  • cDNA_Cupcake Public Forked from Magdoll/cDNA_Cupcake

    Miscellaneous collection of Python and R scripts for processing Iso-Seq data

    csf-ngs/cDNA_Cupcake’s past year of commit activity
    Python 0 BSD-3-Clause-Clear 103 0 0 Updated Mar 28, 2019
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