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CoMSES Net: Education

CoMSES Net Educational Initiatives

CoMSES Net Educational Initiatives

Training Modules, Assessments, and Certification on Good Practices for Computational Modeling

We are developing training modules, assessments, and certificates and badges on good practices for computational modeling. These include making models FAIR, how to use version control (Git/GitHub), performing robust sensitivity analyses over model outputs, and how to containerize your models for easier transitions from local development and testing to high performance compute, high throughput compute, or the ☁️.

Codebase Augmentation Pilot Project

We are collecting a diverse set of computational models from different domains with different input / output characteristics and manually augmenting them to be more FAIR (if needed) and to add containerization that supports execution on the Open Science Grid Consortium's OSPool.

If you'd like to help us pilot these materials and provide early feedback, or if you have any computational models you'd like us to consider for the codebase augmentation pilot project, please let us know!

Current candidates include:

  1. The example wolf sheep predation model from NetLogo
  2. The Communicating Hazard Information in the Modern Environment agent based model (NetLogo)
  3. A Julia ABM on coffee leaf rust
  4. R analysis on drought sensitivity https://doi.org/10.1038/s41467-022-30316-5
  5. The code used in Inverting topography for landscape evolution model process representation
  6. https://github.com/comses-education/hydrotrend
  7. https://github.com/comses-education/GIPL-BMI-Fortran
  8. Dakota SWASH Parameter Study: https://github.com/comses-education/dakota-swash-parameter-study
  9. TOPMODEL with BMI support (in progress) - https://csdms.colorado.edu/wiki/Model:TOPMODEL and https://github.com/NOAA-OWP/topmodel
  10. GeoClaw - https://github.com/clawpack/geoclaw
  11. ADRIA

Hydrological model candidates:

Template repositories and educational materials under development:

References and possible collabs:

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  1. github-starter-course github-starter-course Public template

    A modified Git/GitHub starter course using GitHub Desktop for git novices

    NetLogo 2 4

  2. GIPL-BMI-Fortran GIPL-BMI-Fortran Public

    Forked from permamodel/GIPL-BMI-Fortran

    This is to develop a BMI for GIPL with FORTRAN.

    Jupyter Notebook

  3. csdms_inverting_topography_postglacial csdms_inverting_topography_postglacial Public

    Forked from kbarnhart/inverting_topography_postglacial

    Calculation package: Inverting topography for landscape evolution model process representation

    Python

  4. drought-year-sensitivity drought-year-sensitivity Public

    Forked from zhoylman/drought-year-sensitivity

    FAIR + OSG augmentation of the drought year sensitivity R scripts for https://doi.org/10.1038/s41467-022-30316-5

    R 1

  5. hydrotrend hydrotrend Public

    Forked from csdms-contrib/hydrotrend

    HydroTrend v.3.0 is a climate-driven hydrological water balance and transport model that simulates water discharge and sediment load at a river outlet.

    C

  6. spatialrust-model spatialrust-model Public

    Spatially explicit individual based model that simulates Coffee Leaf Rust epidemics on a coffee farm

    Julia

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