Merge pull request #189 from compomics/versions

Update dependencies
compomics · Sep 17, 2024 · b1e23f3 · b1e23f3
2 parents 0095fa8 + 9052fea
commit b1e23f3
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diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -12,7 +12,7 @@ jobs:
  runs-on: ubuntu-latest
  strategy:
  matrix:
- python-version: ["3.8", "3.9", "3.10", "3.11"]
+ python-version: ["3.9", "3.10", "3.11"]
  steps:
  - uses: actions/checkout@v4
 

diff --git a/ms2rescore/__init__.py b/ms2rescore/__init__.py
@@ -1,6 +1,6 @@
 """MS²Rescore: Sensitive PSM rescoring with predicted MS² peak intensities and RTs."""
 
-__version__ = "3.1.1"
+__version__ = "3.1.2"
 
 from warnings import filterwarnings
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -30,23 +30,23 @@ classifiers = [
  "Development Status :: 5 - Production/Stable",
 ]
 dynamic = ["version"]
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 dependencies = [
  "cascade-config>=0.4.0",
  "click>=7",
  "customtkinter>=5,<6",
- "deeplc>=2.2",
- "deeplcretrainer>=0.2",
+ "deeplc>=3.1",
+ "deeplcretrainer",
  "im2deep>=0.1.3",
  "jinja2>=3",
  "lxml>=4.5",
- "mokapot>=0.9",
+ "mokapot>=0.10",
  "ms2pip>=4.0.0",
  "ms2rescore_rs>=0.3.0",
- "numpy>=1.16.0",
- "pandas>=1.0",
+ "numpy>=1.25",
+ "pandas>=1",
  "plotly>=5",
- "psm_utils>=0.9",
+ "psm_utils>=1.1",
  "pyteomics>=4.7.2",
  "rich>=12",
  "tomli>=2; python_version < '3.11'",