MMEDS/0.8.5

This release's main features are the addition of Meta-Analysis and the addition of these new tools in Analysis: LEfSe, CUTIE, PiCRUSt2, and SparCC.

What's Changed

• Enhancement adding analysis tools by @adamcantor22 in #425
• remove vulnerabilities by @adamcantor22 in #435
• Enhancement meta analysis by @adamcantor22 in #429

Full Changelog: v0.8.1...v0.8.5

MMEDS/0.8.1

This is a bugfix patch designed to fix the issues laid out in #420. It allows for more consistent validation in certain metadata cases.

What's Changed

• Issue fix consistent validation by @adamcantor22 in #421

Full Changelog: v0.8.0...v0.8.1

MMEDS/0.8.0

This release covers:
-Review code base and determine what features are no longer used and need to be removed.
-Address issues #371, #353 and #337: how should data and studies be stored within MMEDS (single study, multiple runs; multiple studies, single run; multiple studies, multiple runs), how do we reload old studies, backup data, and how do we perform meta-analyses.

What's Changed

• Enhancement analysis testing by @mstapylton in #383
• Bump numpy from 1.19.4 to 1.21.0 by @dependabot in #394
• Rolling back analysis testing to working version by @mstapylton in #398
• Enhancement study sequencing separation by @adamcantor22 in #397
• Enhancement dump reload by @adamcantor22 in #417

Full Changelog: v0.7.1...v0.8.0

MMEDS/0.7.1

This release contains several enhancements related to the UI and summary generation.

What's changed

• Dual barcode metadata not adequately checked bug Metadata #376 by @adamcantor22
• Create proper Error Landing page housekeeping webUI #198 by @adamcantor22
• Enhancement more robust UI #374 by @adamcantor22
• Number of analyses associated with study bug webUI #308 by @adamcantor22
• Cookies Warning Security webUI #193 by @adamcantor22
• Coloring of text in PCOA plots should be independent of coloring of points #360 by @adamcantor22
• Different palettes for continuous variables enhancement Summaries #362 by @adamcantor22
• Different palettes for discrete variables SummariesRelating to summary generation #366 by @adamcantor22
• Enhancement summary coloring #372 by @adamcantor22
• Streamline creating summary environment and necessary setup / improve ability to run in different environments bug Summaries #349 by @mstapylton

MMEDS/0.7.0.1

Patch to release v0.7.0

This release fixes issue #365 and establishes summary generation on minerva.

What's Changed

• Enhancement summary env streamline by @mstapylton in #364
• summaries working in production by @mstapylton in #368

Full Changelog: v0.7.0...v0.7.0.1

MMEDS/0.7.0

Release checklist

Seventh release of MMEDS with the following improvements:

1. Improved pdf summaries
2. Additional qiime2 analyses
3. Numerous website improvements
4. Bug fixes
5. And more

What's Changed

• Enhancement upload tests by @adamcantor22 in #291
• Dual barcodes update by @DSWallach in #298
• Enhancement confirm page by @adamcantor22 in #300
• Enhancement move data type by @adamcantor22 in #312
• Enhancement password management by @adamcantor22 in #314
• Enhancement pheniqs implementation by @adamcantor22 in #320
• Documentation developer guide by @DSWallach in #321
• Documentation tool classes by @DSWallach in #329
• Documentation formatter by @DSWallach in #330
• Bug fix summary by @adamcantor22 in #331
• find by access code by @adamcantor22 in #333
• Documentation database by @DSWallach in #332
• Documentation and improvements by @DSWallach in #338
• Bug fix strip error barcodes update by @adamcantor22 in #343
• Enhancement demultiplex test by @mstapylton in #336
• Enhancement summary improvement by @adamcantor22 in #351

Full Changelog: https://github.com/clemente-lab/mmeds-meta/commits/v0.7.0

This is the last release to which the creator of MMEDS, @DSWallach , contributed.