update workflow

.github/workflows/tests.yml

@@ -20,7 +20,7 @@ jobs:
         run: echo "PYTHONPATH=." >> $GITHUB_ENV
 
       - name: Install packages
-        run: pip install -U pip; pip install cryptography; pip install jupyter_client==6.1.12; pip install ipython_genutils==0.2.0; pip install nbconvert==5.6.1; pip install rpy2; pip install ipykernel; pip install pandas==1.2.3; pip install pillow; pip install -U Jinja2==3.0
+        run: pip install -U pip; pip install cryptography; pip install jupyter_client==6.1.12; pip install ipython_genutils==0.2.0; pip install nbconvert==5.6.1; pip install rpy2; pip install ipykernel; pip install pandas==1.2.3; pip install pillow; pip install -U Jinja2==3.0; pip install coverage;
 
       - name: install pandoc
         run: sudo apt-get install pandoc;
@@ -82,7 +82,7 @@ jobs:
         with:
           python-version: 3.9
       - name: Install packages
-        run: pip install -U pip; sudo apt-get install tidy environment-modules -y; pip install cryptography;
+        run: pip install -U pip; sudo apt-get install tidy environment-modules coverage -y; pip install cryptography; pip install coverage;
 
       - name: Set PYTHONPATH
         run: echo "PYTHONPATH=." >> $GITHUB_ENV
@@ -107,7 +107,7 @@ jobs:
 
       - name: Unit Tests
         run: |
-            coverage run --parallel-mode --concurrency=multiprocessing ./mmeds/tests/unit/test.py adder authentication database documents error formatter tool tools uploader util validate spawn snakemake;
+            coverage run --parallel-mode --concurrency=multiprocessing ./mmeds/tests/unit/test.py adder authentication database documents error formatter tools uploader util validate spawn snakemake;
 
       - name: Upload Unit coverage
         uses: codecov/codecov-action@v4