unique() fix and template updates

clemente-lab · Aug 30, 2024 · 2d1dba6 · 2d1dba6
1 parent 79ee4a6
commit 2d1dba6
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Showing 3 changed files with 2 additions and 4 deletions.
diff --git a/mmeds/database/database.py b/mmeds/database/database.py
@@ -1032,10 +1032,8 @@ def get_sequencing_run_locations(self, metadata, user, column=("RawDataProtocol"
         df = pd.read_csv(metadata, sep='\t', header=[0, 1], skiprows=[2, 3, 4])
 
         # Store run names from metadata
-        runs = []
-        for run in df[column]:
-            if run not in runs:
-                runs.append(run)
+        runs = list(df[column].unique())
+
         # Get paths, these should exist due to already checking during validation
         run_paths = {}
         for run in runs:

diff --git a/test_files/Specimen_Example.xlsx b/test_files/Specimen_Example.xlsx
diff --git a/test_files/Subject_Example.xlsx b/test_files/Subject_Example.xlsx