This repository contains files for Snakemake workflows for dahak.
(flot is French for flow.)
You should start with a version of conda
installed.
See snakemake-rules repo for example Snakefile rules and guiding principles.
(Example target file? Test?)
This document walks you through running Snakemake workflows:
This document covers how Snakemake rules and files are organized:
Snakemake rules can use their own conda environments.
To do this, add your conda environmnent .yml to the envs/
directory.
To add or modify the rules, determine the name of the step
you wish to modify, and find it in the rules/
directory.
To view or modify the file containing taxonomic classification workflow settings,
edit taxclass.settings
.
To define your own settings for Snakemake to use, see user.settings
.