pairwiseHudsonFst

About

Calculates population-level fairwise Fst based on Hudson et al. 1992 10.1093/genetics/132.2.583.

Relies on the KRIS package.

Built in R 4.3

Usage

The function accepts a genind object sensu adegenet, and returns a data.frame of population-level Hudson Fst values. Specifying and output_file will save the data.frame to a csv.

Citations

Bhatia, G., Patterson, N., Sankararaman, S., and Price, A.L. (2013). Estimating and interpreting FST: The impact of rare variants. Genome Res. 23, 1514-1521.

Hudson, R.R., Slatkin, M., and Maddison, W.P. (1992). Estimation of levels of gene flow from DNA sequence data. Genetics 132, 583-589.

Bhatia, G., Patterson, N., Sankararaman, S., and Price, A.L. (2013). Estimating and interpreting FST: The impact of rare variants. Genome Res. 23, 1514-1521.

Hudson, R.R., Slatkin, M., and Maddison, W.P. (1992). Estimation of levels of gene flow from DNA sequence data. Genetics 132, 583-589.