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35 Open 72 Closed
35 Open 72 Closed
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Issues list

Very low (negative) values in readcounts, copynumbers, copynumbersnormalized dataframes
#133 opened Mar 31, 2025 by alexvasilikop
1
"Warning: Recycling array of length 1 in vector-array arithmetic is deprecated" question
#132 opened Mar 20, 2025 by griffinfarrow
1
How to get annotated plot for cnv with gene names on the amplified and deleted regions?
#131 opened Feb 25, 2025 by ralanany
Blacklisted regions in applyFilter function without providing a bed file
#128 opened Jul 8, 2024 by alexvasilikop
Genome build hg38
#127 opened May 8, 2024 by henryone0910
Genome for mm39
#126 opened May 8, 2024 by tashaann
T2T genome support
#125 opened May 2, 2024 by liuyang2006
R CMD check: Sporadic test errors; Error in diff2(x, differences = diff) : names() applied to a non-vector
#123 opened Feb 14, 2024 by HenrikBengtsson Next release
3
Is there a way to hack QDNAseq plot methods to plot a point on the log2 ratio plots?
#122 opened Feb 2, 2024 by zetamui
1
Output VCF is not valid due to symbolic allele used as reference allele help wanted
#121 opened Jan 15, 2024 by vlshesketh Next release
7
Marmoset bin annotation creation challenge
#119 opened Nov 24, 2023 by kojimak324
Downloading 1000 Genomes samples is inactive
#118 opened Nov 24, 2023 by kojimak324
Extracting reads from bam file using binReadCounts takes too long question
#117 opened Sep 22, 2023 by Urja25
2
How can I merge binReadCounts results?
#116 opened Apr 6, 2023 by JYLeeBioinfo
exportBins to seg/vcf doesn't contain all calls
#114 opened Feb 21, 2023 by helaersr
QDNAseq 1st time issues
#111 opened Jan 9, 2023 by RMParkes
Directly loading counts matrix question
#110 opened Sep 22, 2022 by shashwatsahay
Export Noise Plot data
#108 opened Apr 7, 2022 by hannesbecher
Export segements *and* calls to same BED file
#107 opened Apr 7, 2022 by hannesbecher
Error in e2[[j]]: subscript out of bounds CGHcall package
#105 opened Feb 23, 2022 by RodrigoGM
1
Running QDNAseq on WES data
#104 opened Feb 20, 2022 by palakpatel09
1
adjust the width/height of the CNV plot
#103 opened Feb 13, 2022 by asaki1986
exportBins to seg/vcf when one or zero CNV are called bug help wanted
#102 opened Jan 27, 2022 by helaersr Next release
1
9
WISH: Update binReadCounts() to read in chunks by default
#101 opened Nov 25, 2021 by HenrikBengtsson
1 of 2 tasks
Next release
error on calculateBlacklist
#99 opened Nov 23, 2021 by briverog
ProTip! Adding no:label will show everything without a label.