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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 136 46

Repositories

Showing 10 of 111 repositories
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 2 MIT 0 5 3 Updated May 17, 2025
  • cojac Public
    cbg-ethz/cojac’s past year of commit activity
    Jupyter Notebook 19 GPL-3.0 5 14 0 Updated May 17, 2025
  • v-pipe-scout Public

    Rapid Viral Variant Exploration and Detection - Interactive WebApp

    cbg-ethz/v-pipe-scout’s past year of commit activity
    Python 0 MIT 0 8 1 Updated May 16, 2025
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 1 2 0 Updated May 16, 2025
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 0 Updated May 12, 2025
  • pMHN Public

    Personalised mutual hazard networks: fixed effects in cancer progression modeling

    cbg-ethz/pMHN’s past year of commit activity
    Python 3 MIT 0 1 0 Updated May 9, 2025
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 3 0 6 3 Updated May 9, 2025
  • cowwid Public

    Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 1 1 0 Updated May 9, 2025
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 136 Apache-2.0 46 35 (5 issues need help) 6 Updated May 8, 2025
  • GenoRepro Public

    Reproducibility Project

    cbg-ethz/GenoRepro’s past year of commit activity
    Python 0 0 0 0 Updated May 7, 2025
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