updated env

.github/workflows/test.yml

@@ -15,22 +15,17 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - uses: actions/cache@v4
-      with:
-        path: ~/.ccache
-        key: ccache-reset-${{ github.sha }}
-        restore-keys: ccache-reset-
-    - name: Set up Python 3.11
+    - name: Set up Python 3.13
       uses: actions/setup-python@v5
       with:
-        python-version: '3.11'
+        python-version: '3.13'
     - name: Add conda to system path
       run: |
         # $CONDA is an environment variable pointing to the root of the miniconda directory
         echo $CONDA/bin >> $GITHUB_PATH
     - name: Install dependencies with conda
       run: |
-        conda install --solver=classic -y python=3.11
+        conda install --solver=classic -y python=3.13
         conda env update --solver=classic --file conda/environment.yml --name base
         conda install --solver=classic flake8
     - name: Run flake8 
@@ -51,7 +46,6 @@ jobs:
       uses: actions/setup-python@v5
       with:
         python-version: '3.10'
-        cache: 'pip'
     - name: Install requirements
       run: pip install -r requirements.txt
     - name: Run tests
@@ -64,23 +58,18 @@ jobs:
 
     steps:
     - uses: actions/checkout@v4
-    - uses: actions/cache@v4
-      with:
-        path: ~/.ccache
-        key: ccache-reset-${{ github.sha }}
-        restore-keys: ccache-reset-
-    - name: Set up Python 3.11
+    - name: Set up Python 3.13
       uses: actions/setup-python@v5
       with:
-        python-version: '3.11'
+        python-version: '3.13'
     - name: Add conda to system path
       uses: conda-incubator/setup-miniconda@v3
       with:
         activate-environment:
     - name: Install dependencies with conda
       run: |
         echo $CONDA/bin >> $GITHUB_PATH
-        conda install -y python=3.11
+        conda install -y python=3.13
         conda env update --file conda/environment.yml --name base
     - name: Run tests
       run: |
@@ -91,11 +80,10 @@ jobs:
     runs-on: macos-latest
     steps:
     - uses: actions/checkout@v4
-    - name: Set up Python 3.9
+    - name: Set up Python 3.13
       uses: actions/setup-python@v5
       with:
-        python-version: '3.9'
-        cache: 'pip'
+        python-version: '3.13'
     - name: Install requirements
       run: pip install -r requirements.txt
     - name: Run tests

conda/environment.yml

@@ -3,12 +3,12 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.11
+  - python=3.13
   - numpy
   - pandas
-  - parmed
-  - gitpython
-  - pyyaml
+  - ParmEd
+  - GitPython
+  - PyYAML
   - scipy
   - h5py
   - pytables

requirements.txt

@@ -1,8 +1,8 @@
-ParmEd>=3.4.3
-numpy>=1.26.2
-pandas>=2.1.3
-pyyaml>=6.0.1
-gitpython>=3.1.43
+GitPython>=3.1.44
 h5py>=3.11.0
-scipy>=1.13.0
+numpy>=2.2.2
+pandas>=2.2.3
+ParmEd>=4.2.2
+PyYAML>=6.0.2
+scipy>=1.15.1
 tables>=3.9.2