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@cantinilab

Machine Learning for Integrative Genomics lab

Popular repositories

  1. momix-notebook momix-notebook Public

    Jupyter Notebook 60 11

  2. OT-scOmics OT-scOmics Public

    This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.

    Python 36 7

  3. Mowgli Mowgli Public

    Single-cell multi-omics integration using Optimal Transport

    Python 34 2

  4. HuMMuS HuMMuS Public

    Molecular interactions inference from single-cell multi-omics data

    Python 15 3

  5. scconfluence scconfluence Public

    A novel method for single-cell diagonal integration: scConfluence

    Python 8

  6. scNET scNET Public

    jupyther notebook comparing reproducibility of single-cell network inference algorithms

    Jupyter Notebook 4 2

Repositories

Showing 9 of 9 repositories
  • HuMMuS Public

    Molecular interactions inference from single-cell multi-omics data

    cantinilab/HuMMuS’s past year of commit activity
    Python 15 AGPL-3.0 3 1 0 Updated Jun 21, 2024
  • GRnnData Public

    Awesome GRN enhanced AnnData toolkit

    cantinilab/GRnnData’s past year of commit activity
    Python 1 GPL-3.0 0 0 2 Updated May 27, 2024
  • Mowgli Public

    Single-cell multi-omics integration using Optimal Transport

    cantinilab/Mowgli’s past year of commit activity
    Python 34 GPL-3.0 2 4 1 Updated Apr 10, 2024
  • mowgli_reproducibility Public

    Data and scripts to reproduce experiments for Mowgli.

    cantinilab/mowgli_reproducibility’s past year of commit activity
    Python 3 1 0 0 Updated Apr 1, 2024
  • scconfluence Public

    A novel method for single-cell diagonal integration: scConfluence

    cantinilab/scconfluence’s past year of commit activity
    Python 8 0 0 0 Updated Mar 19, 2024
  • cantinilab/scc_reproducibility’s past year of commit activity
    Jupyter Notebook 1 0 1 0 Updated Feb 29, 2024
  • cantinilab/momix-notebook’s past year of commit activity
    Jupyter Notebook 60 GPL-3.0 11 3 1 Updated Nov 14, 2023
  • OT-scOmics Public

    This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.

    cantinilab/OT-scOmics’s past year of commit activity
    Python 36 GPL-3.0 7 0 0 Updated Feb 3, 2023
  • scNET Public

    jupyther notebook comparing reproducibility of single-cell network inference algorithms

    cantinilab/scNET’s past year of commit activity
    Jupyter Notebook 4 2 2 1 Updated Sep 15, 2021

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