This repository has been archived by the owner on Nov 9, 2019. It is now read-only.
gatk-protected-1.0.0.0-alpha1.2.3
Pre-release
Pre-release
New features/bugfixes
-Added WDL scripts for running somatic CNV case/PoN workflows
-Added tool for genotyping sex from coverage data (TargetCoverageSexGenotyper)
-Added ACNV tools CreateAllelicPanelOfNormals and CalculatePulldownPhasePosteriors
-Somatic CNV/ACNV tools now take TSV target files as input, rather than BED files (the latter can be converted into the former using the tool ConvertBedToTargetFile)
-Fixed various workflow and plotting issues
-Removed dependency on HDF5-Java JNI Libraries