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This repository has been archived by the owner on Nov 9, 2019. It is now read-only.

gatk-protected-1.0.0.0-alpha1.2.1

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@LeeTL1220 LeeTL1220 released this 17 Jun 20:16
· 366 commits to master since this release
1.0.0.0-alpha1.2.1
b296659

New features/bugfixes

  • New option -numIterSimPerFit 0 to disable refitting between sim-seg iterations. See #503 for more information. When used, this speeds up ACNV, since it will do fewer iterations of MCMC. Results do not seem to be impacted in any appreciable way.
  • Fixed ACS conversion bug that was raising the segment mean to the power of two, twice.
  • Made ACNV Plotting a bit more robust to code changes in other tools.
  • Made the x-axes in ACNV Plotting round the genomic position a bit more sensibly.
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