This is a repository where I am sharing the process of image-processing projects during my visit in Beth Cimini's lab.
Project 1: Highthroughput phenotyping method of guard cells and subsidiary cells in maize (maize_stomata folder)
- Build the pipeline to automatically segment the guard and subsidiary cells, separately
- Optimize the analysis of images to capture the morphological features of the grass stomata
- Determine the morphological profiling analysis method
- Working on tensorflow and Keras workflow to train the raw object masks or images
Project 2 Fun project to create a CellProfiler plugin to measure the bounding box length and width on Cellprofiler Hackson Day!(CellProfiler _Plugin_folder)
