GitBook: [master] 5 pages and one asset modified

README.md

@@ -42,7 +42,7 @@ For this reason:
 
 * we've build upon [brainglobe](https://docs.brainglobe.info/)'s atlas API, ensuring that you can use `brainrender` to visualize data from a wide range of species. 
 * we've created a simple and intuitive interface to download and render data from [publicly available](usage/public.md) datasets like the Allen Mouse Connectome and Janelia's Mouse Light projects.
-* we've built [a ton of functionality](usage/user.md) into `brainrender` to ensure that we can cover all of your visualization needs \(e.g. see these [images](overview/gallery.md) and [examples](overview/examples.md)\). If we missed something or you'd like to see a new feature added, get in touch on [github](https://github.com/BrancoLab/BrainRender)!
+* we've built [a ton of functionality](usage/user.md) into `brainrender` to ensure that we can cover all of your visualization needs \(e.g. see these [images](overview/gallery/) and [examples](overview/examples.md)\). If we missed something or you'd like to see a new feature added, get in touch on [github](https://github.com/BrancoLab/BrainRender)!
 * we're using [`vedo`](https://github.com/marcomusy/vedo), a powerful vtk-based rendering package in python. `vedo`'s flexibility ensures that you can render in `brainrender` any 3d design you can put into a `.obj` or `.stl` file. It's therefore easier than ever to add your custom experimental implant to the renderings. 
 
 

SUMMARY.md

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 ## Overview
 
-* [Gallery](overview/gallery.md)
+* [Gallery](overview/gallery/README.md)
+  * [User Cases](overview/gallery/user-cases.md)
 * [Code examples](overview/examples.md)
 
 ## Installation

overview/gallery/README.md

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+---
+description: Some examples of the kind of images you can create in brainrender
+---
+
+# Gallery
+
+![The mouse brain and skull](../../.gitbook/assets/skull%20%281%29.png)
+
+![Labelled cells in several cortical and sub cortical areas](../../.gitbook/assets/cells.png)
+
+![Location of an optic fiber implanted in the thalamus](../../.gitbook/assets/optic_fiber.png)
+
+![Location of an implanted neuropixel probe in the cortex and thalamus](../../.gitbook/assets/neuropixel.png)
+
+![The brain of  Schistocerca gregaria](../../.gitbook/assets/ibdb.png)
+
+![Gene expression levels for Cacna2d1 across the mouse cortex. ](../../.gitbook/assets/gene_expr.png)
+
+
+
+![Tractography visualisation of projections to the Zona Incerta \(data: the Allen Mouse Connectome project\)](../../.gitbook/assets/tractography.png)
+
+![Layer 5b neurons in the mouse motor cortex. Sagittal view.](../../.gitbook/assets/neurons.png)
+
+
+
+
+
+![The C.Elegans connectome \(data courtesy of Daniel Witvliet and co-authors\)](../../.gitbook/assets/celegans.png)
+
+
+
+![Streamlines visualization of projections from the motor cortex in the mouse brain](../../.gitbook/assets/streamlinespretty.png)
+
+![Views of the human brain](../../.gitbook/assets/humanbrainexp.png)
+
+
+
+
+

overview/gallery/user-cases.md

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+---
+description: A collection of works using brainrender
+---
+
+# User Cases
+
+### Visualizing Decoder Accuracy
+
+A group of students of [neuromatch academy](https://www.neuromatchacademy.org/) \(an open-source computational neuroscience summer school\) used `brainrender` to visualize the accuracy of the models they've build to decode movement from neural activity \([data from Steinmetz et al 2019](https://github.com/nsteinme/steinmetz-et-al-2019)\):
+
+![](../../.gitbook/assets/eer_wytwoaerozr.png)
+