Update list of application-specific databases

bosborne · Mar 5, 2017 · dfdfe9e · dfdfe9e
1 parent 7498387
commit dfdfe9e
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Showing 2 changed files with 5 additions and 13 deletions.
diff --git a/BioPythonUtils.py b/BioPythonUtils.py
@@ -44,8 +44,7 @@ def run(self, edit):
 
         for region in self.view.sel():
 
-            search_str = self.view.substr(region)
-            search_str = search_str.strip()
+            search_str = self.view.substr(region).strip()
 
             if not search_str:
                 sublime.error_message("No search string in selection")
@@ -98,8 +97,7 @@ def run(self, edit):
 
         for region in self.view.sel():
 
-            id_str = self.view.substr(region)
-            id_str = id_str.strip()
+            id_str = self.view.substr(region).strip()
 
             if not id_str:
                 sublime.error_message("No identifiers in selection")
@@ -185,8 +183,7 @@ def run(self, edit):
 
         for region in self.view.sel():
 
-            id_str = self.view.substr(region)
-            id_str = id_str.strip()
+            id_str = self.view.substr(region).strip()
 
             if not id_str:
                 sublime.error_message("No identifiers in selection")
@@ -251,7 +248,7 @@ class TranslateCommand(sublime_plugin.TextCommand):
     def run(self, edit):
 
         for region in self.view.sel():
-            seq_str = self.view.substr(region)
+            seq_str = self.view.substr(region).strip()
 
             # Fasta header pattern
             patt = re.compile('^>\s*\S+')
@@ -339,8 +336,7 @@ def run(self, edit):
 
         for region in self.view.sel():
 
-            seq_str = self.view.substr(region)
-            seq_str = seq_str.strip()
+            seq_str = self.view.substr(region).strip()
 
             if not seq_str:
                 sublime.error_message("No selected text")
@@ -491,4 +487,3 @@ def validate_aa(seq):
     seq_arr = list(seq.upper())
     invalid = list(set(seq_arr) - set(IUPAC.protein.letters))
     return invalid
-id
diff --git a/config.json b/config.json
@@ -8,7 +8,6 @@
   "blast_info": {
     "blastn": [
       "alu_repeats",
-      "16s",
       "chromosome",
       "dbsts",
       "est",
@@ -47,7 +46,6 @@
     ],
     "tblastn": [
       "alu_repeats",
-      "Bacteria and Archaea",
       "chromosome",
       "dbsts",
       "est",
@@ -66,7 +64,6 @@
     ],
     "tblastx": [
       "alu_repeats",
-      "Bacteria and Archaea",
       "chromosome",
       "dbsts",
       "est",