Note on data access

Merge pull request #11 from blab/rewrite

Small updates to the readme

Adding windowed analysis back

Fixing provisioning and prep for gisaid_metadata.tsv.gz

Removing windowed analysis for now

Switching to lineage -> clade to be compatiable with SARS-CoV-2-s…

Include brief installation instructions

First pass at instructions

Adding out of sample validation

Retrieving phenotypes from main

Notebooks for main analyis

Cleaning up analysis; starting figure making

Actually compute delta

Adding index=False

Working windowed analyses

Working informed model

JSON string magic for fixing predictor specification

Saving and retrieving phenotypes

Updating provision phenotypes

Adding provisioning phenotype script

Adding provisioning rule

Fixing syntax error

Adding informed model

Starting windowed analysis

Clearly specifying min-date, max-date, and pivot for single analyses

Adding ability to select predictors by name. Saving processed data as…

Working snakemake pipeline

Fix wildcard reference