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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 88 19

  2. blotter blotter Public

    bedford lab research

    HTML 67 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 22

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 107 repositories
  • esm-selection Public
    blab/esm-selection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 17, 2025
  • evofr Public

    Tools for evolutionary forecasting

    blab/evofr’s past year of commit activity
    Jupyter Notebook 13 AGPL-3.0 1 8 1 Updated May 16, 2025
  • blotter Public

    bedford lab research

    blab/blotter’s past year of commit activity
    HTML 67 93 2 0 Updated May 15, 2025
  • measurements-panel Public

    Manuscript and data describing joint visualization of influenza serology and phylogeny

    blab/measurements-panel’s past year of commit activity
    TeX 0 MIT 0 0 0 Updated May 14, 2025
  • egg-adaptation Public

    Adaptation of influenza virus to chicken eggs

    blab/egg-adaptation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 8, 2025
  • popcast Public

    Long-term forecasts for pathogen populations

    blab/popcast’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 7, 2025
  • ncov-usa-mig Public

    Analysis of SARS-CoV-2 Surveillance Sequences Across the United States

    blab/ncov-usa-mig’s past year of commit activity
    HTML 1 0 0 0 Updated May 5, 2025
  • phylogeo-signal Public

    Ability to characterise transmission between population groups from sequence data

    blab/phylogeo-signal’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 8, 2025
  • fitness-flux Public

    Fitness dynamics of SARS-CoV-2 and seasonal influenza H3N2

    blab/fitness-flux’s past year of commit activity
    Mathematica 1 1 0 1 Updated Apr 1, 2025
  • mpox-la Public
    blab/mpox-la’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 14, 2025
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