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Include semantic change analysis

trvrbpushed 1 commit to main • d310259…ace3ae2 • 
2 days ago

Update gitignore

trvrbpushed 1 commit to main • 35d5638…d310259 • 
2 days ago

Include 650M pretrained embeddings

trvrbpushed 2 commits to main • cfb56f1…35d5638 • 
2 days ago

Include 3B pretrained embeddings

trvrbpushed 1 commit to main • 464815d…cfb56f1 • 
2 days ago

Include 3B fine tuned embeddings

trvrbpushed 1 commit to main • 588d2ad…464815d • 
2 days ago

Remove unused files

trvrbpushed 1 commit to main • 406c9c9…588d2ad • 
2 days ago

Funding note

trvrbpushed 1 commit to main • fe5c394…406c9c9 • 
2 days ago

Update lineage deltas analysis

trvrbpushed 1 commit to main • 86d538d…fe5c394 • 
on Mar 3

Update lineage deltas analysis

trvrbpushed 1 commit to main • 1aedaa6…86d538d • 
on Mar 2

Update H3N2 clade figures

trvrbpushed 1 commit to main • 62220bd…1aedaa6 • 
on Mar 1

Update SARS-CoV-2 clade figures

trvrbpushed 1 commit to main • 15c0de4…62220bd • 
on Mar 1

Scaffold out manuscript along with primary figures

trvrbpushed 1 commit to main • 2771890…15c0de4 • 
on Feb 14

Update lineage deltas analysis to aggregate timepoint-specific analyses

trvrbpushed 2 commits to main • 25aab2a…2771890 • 
on Feb 14

Version SARS-CoV-2 lineage mean dates

trvrbpushed 1 commit to main • 8304601…25aab2a • 
on Feb 13

Update fitness flux analysis to export mean date

trvrbpushed 1 commit to main • 58bb50a…8304601 • 
on Feb 13

Update lineage deltas analysis

trvrbpushed 1 commit to main • 5d7192b…58bb50a • 
on Feb 12

Fix S2 mutation counts

trvrbpushed 1 commit to main • 72035b1…5d7192b • 
on Feb 12

Update SARS-CoV-2 lineage mutation counts

trvrbpushed 1 commit to main • c4822ab…72035b1 • 
on Feb 12

Include ESM comparison

trvrbpushed 1 commit to main • a0dfaa2…c4822ab • 
on Feb 11

Update H3N2 results

trvrbpushed 1 commit to main • c0d9e05…a0dfaa2 • 
on Feb 5

Update SARS-CoV-2 clade plots

trvrbpushed 1 commit to main • 9fdc275…c0d9e05 • 
on Feb 4

Create specific other_timepoint labels

trvrbpushed 1 commit to hier-timepoints • 337993f…fde8b1c • 
on Feb 3

Aggregate sequence counts across timepoints

trvrbcreated hier-timepoints • 337993f • 
on Feb 3

Simplify workflow to always use collapsed_sequence_counts

trvrbpushed 1 commit to main • aa34f59…9fdc275 • 
on Jan 31

Update wave analysis

trvrbpushed 1 commit to main • 82db438…aa34f59 • 
on Nov 12, 2024

Update lineage deltas analysis

trvrbpushed 1 commit to main • 29877ee…82db438 • 
on Nov 11, 2024

Update lineage deltas analysis

trvrbpushed 1 commit to main • 04afac1…29877ee • 
on Nov 8, 2024

Version scaffolded fitness estimates

trvrbpushed 1 commit to main • 16912b2…04afac1 • 
on Nov 8, 2024

Update lineages analysis to be more granular

trvrbpushed 1 commit to main • e217663…16912b2 • 
on Nov 8, 2024

Fix legend clades

trvrbpushed 1 commit to main • cee3a18…e217663 • 
on Nov 7, 2024