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A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

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RNA-seq

This repository contains the Biowdl workflow usable for processing RNA-seq data. This workflow will performs QC (including adapter clipping), mapping, variant-calling and expression quantification.

Documentation

Documentation for this workflow can be found here.

About

This workflow is part of Biowdl developed by the SASC team at Leiden University Medical Center.

Contact

For any question related to RNA-seq, please use the github issue tracker or contact the SASC team directly at: [email protected].