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fix: allow finding dependencies on subpackages in dag #751

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fix: allow finding dependencies on subpackages in dag #751

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b16089a
fix: allow finding dependencies on subpackages in dag
jpfeuffer Feb 23, 2022
6a79cb3
Forgot to remove a line
jpfeuffer Feb 24, 2022
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9 changes: 9 additions & 0 deletions bioconda_utils/graph.py
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Original file line number Diff line number Diff line change
Expand Up @@ -59,10 +59,15 @@ def build(recipes, config, blacklist=None, restrict=True):
#
# Note that this may change once we support conda-build 3.
name2recipe = defaultdict(set)
subpackage2parent = dict()
for meta, recipe in metadata:
name = meta["package"]["name"]
if name not in blacklist:
name2recipe[name].update([recipe])
if "outputs" in meta:
for output in meta["outputs"]:
subpackage2parent[output["name"]] = name


def get_deps(meta, sec):
reqs = meta.get("requirements")
Expand All @@ -78,6 +83,10 @@ def get_inner_deps(dependencies):
for dep in dependencies:
if dep in name2recipe or not restrict:
yield dep
else:
parentdep = subpackage2parent.get(dep)
if parentdep is not None:
yield parentdep

dag = nx.DiGraph()
dag.add_nodes_from(meta["package"]["name"]
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