Skip to content

feat: Update dependencies to latest versions #1054

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 9 commits into from
Aug 1, 2025
Merged

feat: Update dependencies to latest versions #1054

Show file tree
Hide file tree
Changes from 8 commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
1964c27
feat: Update dependencies to latest versions
mencian Jul 17, 2025
d6f13e9
use 2nd most recent conda-forge-pinning
mencian Jul 17, 2025
2e7e9bc
Update bioconda_utils-requirements.txt
mencian Jul 17, 2025
1470a7c
Update bioconda_utils-requirements.txt
mencian Jul 17, 2025
24a6d31
Update bioconda_utils-requirements.txt
mencian Jul 18, 2025
55e84c9
Update bioconda_utils-requirements.txt
mencian Jul 18, 2025
6e4cb2c
Update bioconda_utils-requirements.txt
mencian Jul 18, 2025
0daf3df
Update bioconda_utils-requirements.txt
mencian Jul 24, 2025
f82875e
bump aiohttp to >=3.12.14
mencian Jul 31, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion bioconda_utils/bioconda_utils-conda_build_config.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ MACOSX_DEPLOYMENT_TARGET: # [osx]
- 10.13 # [osx and x86_64]

bamtools:
- "2.5.2"
- "2.5.3"

# NOTE: Workaround https://github.com/conda/conda-build/issues/3974 we slightly alter the values
# from conda-forge-pinnings here (inserting '.*' or ' ' which should be ignored later on).
Expand Down
33 changes: 16 additions & 17 deletions bioconda_utils/bioconda_utils-requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,30 +6,29 @@
conda-forge-pinning=2024.11.29.12.37.53

# basics
python=3.10.*
conda=24.9.*
conda-libmamba-solver=24.1.*
conda-build=24.7.*
conda-index=0.5.*
conda-package-streaming=0.11.*
python=3.12.*
conda=24.11.*
conda-libmamba-solver=24.9.*
conda-build=24.9.*
conda-index=0.6.*
conda-package-streaming=0.12.*
mamba=1.5.*
#boa=0.17.*

argh=0.31.* # CLI
colorlog=6.* # Logging
tqdm=4.66.* # Progress monitor
yaspin=2.* #
tqdm=4.67.* # Progress monitor
yaspin=3.* #
ruamel.yaml=0.18.* # Recipe YAML parsing
pyaml=24.04.* # Faster YAML parser (deprecate?)
networkx=3.3.* # (networkx>3.3 needs python>=3.10)
pandas=2.2.* #
pyaml=24.12.* # Faster YAML parser (deprecate?)
networkx=3.4.* # (networkx>3.3 needs python>=3.10)
pandas=2.3.* #
libblas=*=*openblas # Avoid large mkl package (pulled in by pandas)
boltons=24.0.* #
jsonschema=4.22.* # JSON schema verification
boltons=25.0.* #
jsonschema=4.24.* # JSON schema verification
jinja2=3.1.* #

anaconda-client=1.12.* # anaconda_upload
galaxy-tool-util=24.* # mulled test and container build
anaconda-client=1.13.* # anaconda_upload
galaxy-tool-util=25.* # mulled test and container build
involucro=1.1.* # mulled test and container build
skopeo=1.15.* # docker upload
findutils # find/xargs copy built packages from container
Expand All @@ -44,7 +43,7 @@ aiohttp-jinja2 # jinja2 renderer for aiohttp.web
aiohttp-session #
aiohttp-security #
aiofiles=23.* # async open
aioftp=0.22.* # FTP lib
aioftp=0.26.* # FTP lib
backoff=2.2.* # retrying of failed API calls
cachetools=5.3.* # request caching (NEEDED?)

Expand Down