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feat: Bioconductor skeleton updates #1027

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merged 2 commits into from
Dec 23, 2024
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@daler daler commented Dec 22, 2024

  • When running bioconda-utils bioconductor-skeleton on Bioconductor data packages, I was getting self-signed SSL errors (@bgruening is this expected?). This change allow such errors to be ignored, returning None for the url.
  • In this round of Bioconductor 3.20 updates, it seems like a lot of packages are now missing zlib. I still haven't pinpointed the reason, but I'm guessing it has something to do with the updates to pinnings. So for BioC packages that are detected to be compiled, this adds zlib to host dependencies.

@daler daler changed the title Bioconductor skeleton updates feat: Bioconductor skeleton updates Dec 22, 2024
@bgruening
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Thanks @daler! I don't think this is expected, strange.

@daler daler merged commit 5a14a3e into master Dec 23, 2024
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@daler daler deleted the bioconductor-skeleton-updates branch December 23, 2024 14:28
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aliciaaevans commented Dec 26, 2024

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4 participants