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build failures
BiocondaBot edited this page Feb 10, 2025
·
427 revisions
Automatically updated (nightly) list of build failures that currently block builds from the listed recipes. Please help with fixing them!
| recipe | downloads | depending | skiplisted | category | build failures | pull requests | reason |
|---|---|---|---|---|---|---|---|
| muscle | 350990 | 176 | True | compiler error | linux-64 | show | |
| muscle | 350990 | 176 | True | compiler error | linux-aarch64 | show | |
| perl-html-tidy | 167790 | 143 | True | linux-64 | show | ||
| perl-html-tidy | 167790 | 143 | True | osx-64 | show | ||
| paml | 238292 | 116 | True | compiler error | osx-64 | show | |
| perl-bio-samtools | 236635 | 113 | True | osx-64 | show | ||
| t_coffee | 88746 | 112 | True | source download error | osx-64 | show | |
| t-coffee | 88746 | 112 | True | source download error | osx-64 | show | |
| iqtree | 837261 | 40 | True | compiler error | osx-64 | show | |
| vcflib | 202012 | 40 | True | compiler error | linux-64 | show | |
| vcflib | 202012 | 40 | True | compiler error | linux-aarch64 | show | |
| vcflib | 202012 | 40 | True | compiler error | osx-64 | show | |
| cyvcf2 | 429877 | 35 | True | dependency issue | linux-64 | show | |
| cyvcf2 | 429877 | 35 | True | compiler error | linux-aarch64 | show | |
| freebayes | 337343 | 32 | True | compiler error | linux-64 | show | |
| freebayes | 337343 | 32 | True | compiler error | linux-aarch64 | show | |
| freebayes | 337343 | 32 | True | dependency issue | osx-64 | show | |
| racon | 213432 | 29 | True | compiler error | osx-arm64 | show | |
| grep | 50191 | 27 | True | linux-64 | show | new versions in conda-forge; mulled-build reports "package grep-3.4-h93e12ee_5 i... s excluded by strict repo priority"
|
|
| grep | 50191 | 27 | True | osx-64 | show | new versions in conda-forge; mulled-build reports "package grep-3.4-h93e12ee_5 i... s excluded by strict repo priority"
|
|
| tbl2asn-forever | 74627 | 25 | True | test failure | osx-64 | show | |
| megahit | 246745 | 22 | True | compiler error | linux-64 | show | |
| megahit | 246745 | 22 | True | compiler error | linux-aarch64 | show | |
| sorted_nearest | 150409 | 22 | True | test failure | osx-64 | show | |
| cdbtools | 94623 | 20 | True | source download error | linux-64 | show | |
| cdbtools | 94623 | 20 | True | source download error | linux-aarch64 | show | |
| cdbtools | 94623 | 20 | True | source download error | osx-64 | show | |
| augustus | 200384 | 18 | True | compiler error | linux-64 | show | |
| augustus | 200384 | 18 | True | compiler error | osx-64 | show | |
| augustus/3.3.3 | 200384 | 18 | True | compiler error | linux-64 | show | |
| augustus/3.3.3 | 200384 | 18 | True | compiler error | osx-64 | show | |
| bioconductor-gsva | 67171 | 16 | True | dependency issue | linux-aarch64 | show | r-magick is not built for aarch64 |
| logomaker | 51450 | 16 | True | linux-64 | show | also on conda-forge | |
| logomaker | 51450 | 16 | True | osx-64 | show | also on conda-forge | |
| bioconductor-alabaster.base | 2316 | 16 | True | osx-64 | show | ||
| kallisto | 207502 | 15 | True | compiler error | osx-arm64 | show | |
| genometools-genometools | 88489 | 14 | True | dependency issue | linux-64 | show | |
| genometools-genometools | 88489 | 14 | True | dependency issue | linux-aarch64 | show | |
| genometools-genometools | 88489 | 14 | True | dependency issue | osx-64 | show | |
| bedops | 194063 | 13 | True | compiler error | osx-64 | show | |
| pyopenms | 38008 | 11 | True | osx-64 | show | ||
| bellmans-gapc | 28067 | 11 | True | compiler error | linux-aarch64 | show | |
| bioconductor-alabaster.matrix | 2216 | 11 | True | dependency issue | osx-64 | show | |
| ntcard | 20458 | 9 | True | compiler error | osx-64 | show | |
| ntcard | 20458 | 9 | True | compiler error | osx-arm64 | show | |
| bioconductor-alabaster.ranges | 2223 | 9 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| bioconductor-alabaster.se | 2182 | 8 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| bifrost | 28453 | 7 | True | compiler error | osx-arm64 | show | |
| piler-cr | 16756 | 7 | True | compiler error | osx-64 | show | |
| medaka | 271681 | 6 | True | dependency issue | linux-64 | show | |
| bioconductor-chromvar | 45865 | 6 | False | osx-64 | show | ||
| r-pcalg | 4315 | 6 | True | compiler error | osx-64 | show | |
| bioconductor-lpsymphony | 60904 | 5 | True | compiler error | osx-64 | show | |
| r-alakazam | 19610 | 5 | True | conda/mamba bug | linux-64 | show | r-alakazam wanted to move from conda-forge but strict priority blocks it |
| r-alakazam | 19610 | 5 | True | test failure | osx-64 | show | |
| seqfu | 143233 | 4 | True | compiler error | osx-64 | show | |
| wfmash | 32816 | 4 | True | compiler error | linux-64 | show | |
| wfmash | 32816 | 4 | True | compiler error | linux-aarch64 | show | |
| bioconductor-rbowtie2 | 31601 | 4 | True | compiler error | linux-64 | show | zlib is somehow still being searched for in main system lib |
| bioconductor-rbowtie2 | 31601 | 4 | True | compiler error | linux-aarch64 | show | zlib is somehow still being searched for in main system lib |
| bioconductor-rbowtie2 | 31601 | 4 | True | compiler error | osx-64 | show | zlib is somehow still being searched for in main system lib |
| recon | 25713 | 4 | True | source download error | linux-64 | show | |
| recon | 25713 | 4 | True | source download error | linux-aarch64 | show | |
| recon | 25713 | 4 | True | source download error | osx-64 | show | |
| bcalm | 24440 | 4 | True | compiler error | osx-64 | show | |
| rnashapes | 21403 | 4 | True | compiler error | osx-64 | show | |
| libmems | 13233 | 4 | True | compiler error | linux-64 | show | |
| rapsearch | 12497 | 4 | True | compiler error | linux-64 | show | |
| r-dnet | 12085 | 4 | True | dependency issue | linux-64 | show | |
| bioconductor-epinem | 10285 | 4 | True | dependency issue | linux-64 | show | needs r-bourtroslab.plotting.general added to conda-forge |
| bioconductor-epinem | 10285 | 4 | True | dependency issue | osx-64 | show | needs r-bourtroslab.plotting.general added to conda-forge |
| bioconductor-alabaster.sce | 2119 | 4 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| hhsuite | 303921 | 3 | True | compiler error | linux-64 | show | |
| hhsuite | 303921 | 3 | True | compiler error | linux-aarch64 | show | |
| moabs | 86209 | 3 | True | compiler error | linux-64 | show | |
| moabs | 86209 | 3 | True | compiler error | osx-64 | show | |
| bioconductor-monocle | 55130 | 3 | True | dependency issue | osx-64 | show | |
| bioconductor-msa | 32394 | 3 | True | compiler error | osx-64 | show | |
| phipack | 13378 | 3 | True | compiler error | osx-64 | show | |
| mauvealigner | 12600 | 3 | True | compiler error | linux-64 | show | |
| bioconductor-rawrr | 5608 | 3 | True | dependency issue | linux-64 | show | needs mono |
| bioconductor-rawrr | 5608 | 3 | True | dependency issue | osx-64 | show | needs mono |
| bioconductor-mosdef | 136 | 3 | True | dependency issue | osx-64 | show | clusterprofiler needs to be fixed |
| usher | 250957 | 2 | True | compiler error | linux-64 | show | |
| usher | 250957 | 2 | True | compiler error | linux-aarch64 | show | |
| usher | 250957 | 2 | True | compiler error | osx-64 | show | |
| bioconductor-diffbind | 89196 | 2 | True | compiler error | osx-64 | show | |
| libsequence | 57070 | 2 | True | compiler error | osx-64 | show | |
| libsequence/1.8.4 | 57070 | 2 | True | linux-64 | show | ||
| pbcopper | 54000 | 2 | True | compiler error | linux-64 | show | |
| pbcopper | 54000 | 2 | True | compiler error | linux-aarch64 | show | |
| dinopy | 53402 | 2 | True | dependency issue | linux-64 | show | |
| dinopy | 53402 | 2 | True | dependency issue | linux-aarch64 | show | |
| dinopy | 53402 | 2 | True | dependency issue | osx-64 | show | |
| razers3 | 48858 | 2 | True | compiler error | osx-64 | show | |
| python-bioext | 42572 | 2 | True | compiler error | osx-arm64 | show | |
| bioconductor-bgeedb | 37944 | 2 | True | dependency issue | linux-64 | show | needs r-bread package to be added to conda-forge |
| bioconductor-bgeedb | 37944 | 2 | True | dependency issue | osx-64 | show | needs r-bread package to be added to conda-forge |
| plastid | 31170 | 2 | True | dependency issue | linux-64 | show | |
| plastid | 31170 | 2 | True | osx-64 | show | ||
| bioconductor-gmapr | 29534 | 2 | True | compiler error | linux-aarch64 | show | samtools/libbam.a error adding symbols file in wrong format |
| bioconductor-gmapr | 29534 | 2 | True | test failure | osx-64 | show | |
| assembly-stats | 29106 | 2 | True | conda/mamba bug | osx-64 | show | see https://github.com/conda/conda-build/issues/5429 |
| bioconductor-bambu | 28608 | 2 | True | linux-64 | show | waiting for r-xgboost R 4.4 migration on conda-forge https://github.com/conda-fo... rge/xgboost-feedstock/pull/196
|
|
| bioconductor-bambu | 28608 | 2 | True | dependency issue | linux-aarch64 | show | |
| bioconductor-bambu | 28608 | 2 | True | osx-64 | show | ||
| links | 27356 | 2 | True | compiler error | linux-64 | show | |
| links | 27356 | 2 | True | compiler error | linux-aarch64 | show | |
| evidencemodeler | 24028 | 2 | True | compiler error | osx-64 | show | |
| minia | 22384 | 2 | True | compiler error | linux-64 | show | |
| snap | 22254 | 2 | True | source download error | linux-64 | show | |
| qax | 18637 | 2 | True | compiler error | linux-64 | show | |
| qax | 18637 | 2 | True | compiler error | osx-64 | show | |
| r-grain | 18094 | 2 | True | dependency issue | osx-64 | show | dependency bioconductor-rgraphviz is also skipped for osx-64 |
| mindthegap | 18039 | 2 | True | compiler error | osx-64 | show | |
| vmatch | 15845 | 2 | True | linux-64 | show | ||
| sga | 15051 | 2 | True | compiler error | osx-64 | show | |
| treekin | 14544 | 2 | True | test failure | linux-64 | show | |
| ltr_finder | 13940 | 2 | True | compiler error | osx-64 | show | |
| ont_vbz_hdf_plugin | 13280 | 2 | True | compiler error | linux-64 | show | |
| wise2 | 9266 | 2 | True | compiler error | osx-64 | show | |
| sonlib | 7719 | 2 | True | compiler error | linux-64 | show | |
| sonlib | 7719 | 2 | True | compiler error | osx-64 | show | |
| pywfa | 7042 | 2 | True | linux-64 | show | sha256 mismatch | |
| pywfa | 7042 | 2 | True | checksum mismatch | osx-64 | show | |
| irf | 3615 | 2 | True | compiler error | osx-64 | show | |
| bioconductor-alabaster.string | 2138 | 2 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| unifrac-binaries | 259654 | 1 | True | osx-64 | show | ||
| moments | 204353 | 1 | True | checksum mismatch | linux-64 | show | |
| moments | 204353 | 1 | True | checksum mismatch | linux-aarch64 | show | |
| moments | 204353 | 1 | True | checksum mismatch | osx-64 | show | |
| proteinortho | 163042 | 1 | True | compiler error | osx-64 | show | |
| jcvi | 160224 | 1 | True | disk space | linux-64 | show | The bulk GitHub Actions runner ran out of disk space. Try in a PR. |
| jcvi | 160224 | 1 | True | disk space | linux-aarch64 | show | |
| gimmemotifs | 142964 | 1 | True | linux-64 | show | ||
| gimmemotifs | 142964 | 1 | True | osx-64 | show | ||
| ariba | 99261 | 1 | True | dependency issue | linux-64 | show | |
| mothur | 97826 | 1 | True | linux-64 | show | ||
| ivar | 96965 | 1 | True | compiler error | linux-64 | show | |
| ivar | 96965 | 1 | True | compiler error | linux-aarch64 | show | |
| masurca | 77728 | 1 | True | linux-64 | show | ||
| comet-ms | 72948 | 1 | True | compiler error | linux-64 | show | |
| comet-ms | 72948 | 1 | True | compiler error | linux-aarch64 | show | |
| comet-ms/2021010 | 72948 | 1 | True | linux-64 | show | ||
| duphold | 56734 | 1 | True | dependency issue | linux-64 | show | |
| parsnp | 53844 | 1 | True | test failure | osx-64 | show | |
| bam-readcount | 52728 | 1 | True | compiler error | linux-64 | show | |
| bam-readcount | 52728 | 1 | True | compiler error | linux-aarch64 | show | |
| bam-readcount | 52728 | 1 | True | compiler error | osx-64 | show | |
| bamutil | 46772 | 1 | True | osx-64 | show | ||
| graphmap | 45270 | 1 | True | compiler error | linux-64 | show | |
| graphmap | 45270 | 1 | True | compiler error | linux-aarch64 | show | |
| rscape | 41150 | 1 | True | compiler error | osx-64 | show | |
| mbg | 39670 | 1 | True | compiler error | linux-64 | show | |
| mbg | 39670 | 1 | True | compiler error | linux-aarch64 | show | |
| cancerit-allelecount | 32545 | 1 | True | compiler error | linux-64 | show | |
| cancerit-allelecount | 32545 | 1 | True | compiler error | linux-aarch64 | show | cannot find ./src/bam_access.o No such file or directory |
| genmap | 32509 | 1 | True | linux-64 | show | ||
| genmap | 32509 | 1 | True | osx-64 | show | ||
| sqt | 30821 | 1 | True | dependency issue | linux-64 | show | |
| sqt | 30821 | 1 | True | dependency issue | osx-64 | show | |
| bioconductor-scrnaseq | 29716 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| maxentpy | 29546 | 1 | True | compiler error | linux-64 | show | |
| maxentpy | 29546 | 1 | True | compiler error | osx-64 | show | |
| arcs | 28569 | 1 | True | compiler error | linux-64 | show | |
| arcs | 28569 | 1 | True | compiler error | linux-aarch64 | show | |
| rnablueprint | 27549 | 1 | True | compiler error | linux-64 | show | |
| rnablueprint | 27549 | 1 | True | compiler error | osx-64 | show | |
| bioconductor-scdblfinder | 22666 | 1 | True | dependency issue | linux-64 | show | |
| bioconductor-rhisat2 | 22359 | 1 | True | compiler error | osx-64 | show | 'iostream' file not found |
| pasa | 22258 | 1 | True | compiler error | osx-64 | show | |
| snoscan | 21265 | 1 | True | linux-64 | show | ||
| snoscan | 21265 | 1 | True | osx-64 | show | ||
| bioconductor-scds | 21209 | 1 | True | dependency issue | linux-64 | show | needs updated r-xgboost package to be added to conda-forge (for R 4.4) |
| bioconductor-scds | 21209 | 1 | True | dependency issue | osx-64 | show | needs updated r-xgboost package to be added to conda-forge (for R 4.4) |
| chopper | 17866 | 1 | True | compiler error | linux-64 | show | |
| chopper | 17866 | 1 | True | compiler error | osx-64 | show | |
| fastq-tools | 17378 | 1 | True | compiler error | osx-64 | show | |
| bioconductor-omnipathr | 17054 | 1 | True | linux-64 | show | error removing tempfile at end of build | |
| bioconductor-omnipathr | 17054 | 1 | True | osx-64 | show | error removing tempfile at end of build | |
| glimmer | 15503 | 1 | True | linux-64 | show | ||
| bioconductor-bayesspace | 15014 | 1 | True | dependency issue | linux-64 | show | |
| bioconductor-bayesspace | 15014 | 1 | True | dependency issue | osx-64 | show | |
| ucsc-clustergenes | 14881 | 1 | True | linux-64 | show | ||
| bioconductor-celldex | 14676 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| yahmm | 14550 | 1 | True | compiler error | linux-64 | show | |
| yahmm | 14550 | 1 | True | compiler error | osx-64 | show | |
| ucsc-bamtopsl | 14547 | 1 | True | linux-aarch64 | show | ||
| pullseq | 14436 | 1 | True | compiler error | osx-64 | show | |
| r-tmae | 14315 | 1 | True | dependency issue | linux-64 | show | |
| bioconductor-rsbml | 12367 | 1 | True | compiler error | linux-64 | show | expected primary-expression before 'const' |
| bioconductor-rsbml | 12367 | 1 | True | compiler error | osx-64 | show | |
| cuttlefish | 11134 | 1 | True | compiler error | linux-64 | show | |
| cuttlefish | 11134 | 1 | True | compiler error | osx-arm64 | show | |
| ont-modkit | 10650 | 1 | True | compiler error | osx-64 | show | |
| dragmap | 10305 | 1 | True | linux-64 | show | missing license | |
| mnnpy | 9806 | 1 | True | dependency issue | linux-64 | show | |
| mnnpy | 9806 | 1 | True | dependency issue | osx-64 | show | |
| mccortex | 9343 | 1 | True | linux-64 | show | ||
| mccortex | 9343 | 1 | True | osx-64 | show | ||
| curves | 9202 | 1 | True | compiler error | osx-64 | show | |
| ra | 8954 | 1 | True | linux-64 | show | ||
| bioconductor-nempi | 8380 | 1 | True | dependency issue | linux-64 | show | needs bioconductor-epinem to be fixed |
| bioconductor-nempi | 8380 | 1 | True | dependency issue | osx-64 | show | needs bioconductor-epinem to be fixed |
| transrate-tools | 8142 | 1 | True | linux-64 | show | ||
| porechop_abi | 7341 | 1 | True | osx-64 | show | ||
| biolite-tools | 7153 | 1 | True | osx-64 | show | ||
| bs_call | 6995 | 1 | True | osx-64 | show | ||
| godmd | 6676 | 1 | True | linux-64 | show | ||
| godmd | 6676 | 1 | True | osx-64 | show | ||
| kwip | 6541 | 1 | True | linux-64 | show | ||
| pgsa | 5999 | 1 | True | linux-64 | show | ||
| phylommand | 5246 | 1 | True | compiler error | osx-64 | show | |
| clan | 4313 | 1 | True | compiler error | linux-64 | show | |
| bioconductor-rbwa | 4257 | 1 | True | compiler error | linux-64 | show | seems to be using system libraries, and zlib is not installed on system. |
| nextpolish | 4087 | 1 | True | compiler error | osx-64 | show | |
| pulchra | 3856 | 1 | True | source download error | linux-64 | show | |
| dist_est | 2647 | 1 | True | compiler error | osx-64 | show | |
| libshorah | 2565 | 1 | True | linux-64 | show | ||
| libshorah | 2565 | 1 | True | osx-64 | show | ||
| fast-edit-distance | 2479 | 1 | True | compiler error | linux-64 | show | pip can't find version from source |
| fast-edit-distance | 2479 | 1 | True | compiler error | linux-aarch64 | show | pip can't find version from source |
| fast-edit-distance | 2479 | 1 | True | compiler error | osx-64 | show | pip can't find version from source |
| fast-edit-distance | 2479 | 1 | True | compiler error | osx-arm64 | show | pip can't find version from source |
| bioconductor-alabaster.mae | 2125 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| bioconductor-alabaster.vcf | 2093 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| bioconductor-alabaster.spatial | 2073 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| bioconductor-alabaster.bumpy | 2069 | 1 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| deepchopper-cli | 1155 | 1 | True | compiler error | osx-64 | show | |
| ggcat | 380 | 1 | True | osx-64 | show | ||
| ggcat | 380 | 1 | True | osx-arm64 | show | ||
| unifrac | 538628 | 0 | True | test failure | linux-64 | show | |
| unifrac | 538628 | 0 | True | test failure | osx-64 | show | |
| rust-bio-tools | 279560 | 0 | True | linux-64 | show | ||
| rust-bio-tools | 279560 | 0 | True | linux-aarch64 | show | ||
| biobambam | 111651 | 0 | True | compiler error | linux-aarch64 | show | |
| gemini | 108719 | 0 | True | dependency issue | linux-64 | show | needs bcolz, which is now unsupported for a year |
| gemini | 108719 | 0 | True | dependency issue | linux-aarch64 | show | |
| gemini | 108719 | 0 | True | dependency issue | osx-64 | show | needs bcolz, which is now unsupported for a year |
| mikado | 100059 | 0 | True | linux-64 | show | ||
| mikado | 100059 | 0 | True | osx-64 | show | ||
| r-bcbiornaseq | 90447 | 0 | True | linux-64 | show | ||
| cdna_cupcake | 86752 | 0 | True | linux-64 | show | ||
| cdna_cupcake | 86752 | 0 | True | osx-64 | show | ||
| genenotebook | 84180 | 0 | True | linux-64 | show | ||
| megalodon | 84036 | 0 | True | test failure | linux-64 | show | |
| megalodon | 84036 | 0 | True | test failure | linux-aarch64 | show | |
| megalodon | 84036 | 0 | True | test failure | osx-64 | show | |
| jbrowse | 77788 | 0 | True | linux-64 | show | ||
| bioconductor-titancna | 71718 | 0 | True | osx-64 | show | ||
| longshot | 69359 | 0 | True | osx-64 | show | ||
| tracy | 67981 | 0 | True | linux-64 | show | exists in conda-forge | |
| tracy | 67981 | 0 | True | linux-aarch64 | show | exists in conda-forge | |
| tracy | 67981 | 0 | True | osx-64 | show | exists in conda-forge | |
| annonars | 56445 | 0 | True | linux-64 | show | ||
| annonars | 56445 | 0 | True | linux-aarch64 | show | ||
| bioconductor-chipcomp | 52806 | 0 | True | linux-aarch64 | show | ||
| bioconductor-chipcomp | 52806 | 0 | True | osx-64 | show | ||
| krakenuniq | 52522 | 0 | True | linux-64 | show | ||
| krakenuniq | 52522 | 0 | True | osx-64 | show | ||
| poppunk | 52143 | 0 | True | osx-64 | show | ||
| r-hemdag | 51256 | 0 | True | osx-64 | show | ||
| preseq | 51005 | 0 | True | linux-64 | show | ||
| preseq | 51005 | 0 | True | linux-aarch64 | show | ||
| r-sigminer | 49790 | 0 | True | linux-64 | show | ||
| r-sigminer | 49790 | 0 | True | linux-aarch64 | show | ||
| r-sigminer | 49790 | 0 | True | osx-64 | show | ||
| bioconductor-podkat | 46762 | 0 | True | linux-64 | show | ||
| bioconductor-acme | 46547 | 0 | True | osx-64 | show | ||
| artic-tools | 46522 | 0 | True | linux-64 | show | ||
| artic-tools | 46522 | 0 | True | linux-aarch64 | show | ||
| bioconductor-chromstar | 45863 | 0 | True | compiler error | osx-64 | show | 13:49:15 BIOCONDA INFO (ERR) /opt/mambaforge/envs/bioconda/conda-bld/bioconducto... r-chromstar_1701870247148/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include/omp.h:491:39: error: expected 'match' clause on 'omp declare variant' directive 13:49:15 BIOCONDA INFO (ERR) #pragma omp begin declare variant match(device={kind(nohost)})
|
| bioconductor-messina | 45225 | 0 | True | osx-64 | show | ||
| bioconductor-metahdep | 45200 | 0 | True | osx-64 | show | ||
| percolator | 44721 | 0 | True | linux-64 | show | ||
| bioconductor-ping | 43706 | 0 | True | osx-64 | show | ||
| bioconductor-motifbreakr | 43213 | 0 | True | linux-64 | show | ||
| mehari | 41511 | 0 | True | linux-64 | show | ||
| mehari | 41511 | 0 | True | linux-aarch64 | show | ||
| cgpbigwig | 40558 | 0 | True | linux-64 | show | ||
| cgpbigwig | 40558 | 0 | True | linux-aarch64 | show | ||
| cnv_facets | 40138 | 0 | True | linux-64 | show | ||
| cnv_facets | 40138 | 0 | True | linux-aarch64 | show | ||
| bioconductor-variantfiltering | 38642 | 0 | True | osx-64 | show | ||
| arriba | 38384 | 0 | True | linux-64 | show | ||
| arriba | 38384 | 0 | True | linux-aarch64 | show | ||
| arriba | 38384 | 0 | True | osx-64 | show | ||
| bioconductor-isolde | 38291 | 0 | True | osx-64 | show | ||
| bioconductor-harshlight | 38171 | 0 | True | osx-64 | show | ||
| gangstr | 37860 | 0 | True | linux-64 | show | ||
| gangstr | 37860 | 0 | True | linux-aarch64 | show | ||
| gangstr | 37860 | 0 | True | osx-64 | show | ||
| variantbam | 36878 | 0 | True | linux-64 | show | ||
| bioconductor-splinter | 36591 | 0 | True | linux-64 | show | ||
| portcullis | 36319 | 0 | True | linux-64 | show | ||
| r-biodb | 36301 | 0 | True | linux-64 | show | ||
| filtlong | 36132 | 0 | True | linux-64 | show | ||
| filtlong | 36132 | 0 | True | linux-aarch64 | show | ||
| ldblockshow | 36120 | 0 | True | linux-64 | show | ||
| ldblockshow | 36120 | 0 | True | osx-64 | show | ||
| bioconductor-cytoml | 33907 | 0 | True | compiler error | linux-64 | show | |
| bioconductor-cytoml | 33907 | 0 | True | compiler error | osx-64 | show | |
| lorikeet-genome | 33837 | 0 | True | linux-64 | show | ||
| gat | 33087 | 0 | True | linux-64 | show | ||
| gat | 33087 | 0 | True | osx-64 | show | ||
| bioconductor-slalom | 32425 | 0 | True | osx-64 | show | ||
| bioconductor-seq2pathway | 32022 | 0 | True | linux-64 | show | ||
| bioconductor-dmrcatedata | 31990 | 0 | True | linux-64 | show | ||
| bioconductor-descan2 | 31486 | 0 | True | linux-aarch64 | show | ||
| ragout | 31471 | 0 | True | osx-64 | show | ||
| bioconductor-rmmquant | 31388 | 0 | True | osx-64 | show | ||
| bioconductor-yapsa | 31241 | 0 | True | linux-64 | show | ||
| bioconductor-rarevariantvis | 31211 | 0 | True | linux-64 | show | ||
| bioconductor-metabosignal | 30290 | 0 | True | linux-64 | show | ||
| albatradis | 30274 | 0 | True | linux-64 | show | ||
| bioconductor-r3cpet | 30098 | 0 | True | osx-64 | show | ||
| bioconductor-dmrcaller | 29818 | 0 | True | linux-aarch64 | show | ||
| bioconductor-esatac | 29696 | 0 | True | linux-64 | show | ||
| bioconductor-esatac | 29696 | 0 | True | dependency issue | linux-aarch64 | show | needs bioconductor-rbowtie2 |
| bioconductor-esatac | 29696 | 0 | True | osx-64 | show | ||
| bioconductor-matrixrider | 29660 | 0 | True | osx-64 | show | ||
| bamtocov | 29480 | 0 | True | linux-64 | show | ||
| bamtocov | 29480 | 0 | True | osx-64 | show | ||
| bioconductor-geneticsped | 29455 | 0 | True | osx-64 | show | ||
| bioconductor-aneufinder | 29272 | 0 | True | osx-64 | show | ||
| express | 28997 | 0 | True | linux-64 | show | ||
| bioconductor-ccfindr | 28981 | 0 | True | linux-64 | show | ||
| bioconductor-ccfindr | 28981 | 0 | True | osx-64 | show | ||
| bioconductor-deepbluer | 28619 | 0 | True | linux-64 | show | ||
| samwell | 28471 | 0 | True | linux-64 | show | ||
| samwell | 28471 | 0 | True | osx-64 | show | ||
| bioconductor-sictools | 27654 | 0 | True | linux-64 | show | ||
| bioconductor-elmer | 27240 | 0 | True | linux-64 | show | ||
| starseqr | 27018 | 0 | True | linux-64 | show | ||
| starseqr | 27018 | 0 | True | osx-64 | show | ||
| pheniqs | 26607 | 0 | True | linux-64 | show | ||
| pheniqs | 26607 | 0 | True | osx-64 | show | ||
| strling | 26596 | 0 | True | linux-64 | show | ||
| malva | 26440 | 0 | True | linux-64 | show | ||
| r-dartr | 26273 | 0 | True | linux-64 | show | ||
| bioconductor-ihwpaper | 25911 | 0 | True | osx-64 | show | ||
| ucsc-farandomize | 25630 | 0 | True | linux-64 | show | ||
| regtools | 25332 | 0 | True | osx-64 | show | ||
| bioconductor-signaturesearch | 25000 | 0 | True | osx-64 | show | ||
| admixtools | 24887 | 0 | True | osx-64 | show | ||
| bioconductor-adacgh2 | 24695 | 0 | True | linux-64 | show | ||
| bioconductor-adacgh2 | 24695 | 0 | True | osx-64 | show | ||
| pymvpa | 24605 | 0 | True | linux-64 | show | ||
| pymvpa | 24605 | 0 | True | osx-64 | show | ||
| bioconductor-rmassbank | 24321 | 0 | True | osx-64 | show | ||
| cellsnp-lite | 24134 | 0 | True | linux-64 | show | ||
| cellsnp-lite | 24134 | 0 | True | linux-aarch64 | show | ||
| cellsnp-lite | 24134 | 0 | True | osx-64 | show | ||
| cellsnp-lite | 24134 | 0 | True | osx-arm64 | show | ||
| pcaone | 24023 | 0 | True | linux-64 | show | ||
| rosella | 23987 | 0 | True | linux-64 | show | ||
| bioconductor-gnet2 | 23906 | 0 | True | linux-64 | show | ||
| bioconductor-gnet2 | 23906 | 0 | True | linux-aarch64 | show | ||
| bioconductor-gnet2 | 23906 | 0 | True | osx-64 | show | ||
| pandaseq | 23902 | 0 | True | osx-64 | show | ||
| pandaseq/2.8.1 | 23902 | 0 | True | osx-64 | show | ||
| bioconductor-antiprofilesdata | 23595 | 0 | True | linux-64 | show | ||
| r-histonehmm | 23465 | 0 | True | linux-64 | show | ||
| bioconductor-amaretto | 23048 | 0 | True | osx-64 | show | ||
| guidescan | 22806 | 0 | True | linux-64 | show | ||
| guidescan | 22806 | 0 | True | linux-aarch64 | show | ||
| d4tools | 22795 | 0 | True | osx-64 | show | ||
| bioconductor-pasillatranscriptexpr | 22624 | 0 | True | checksum mismatch | linux-64 | show | |
| ksw | 22487 | 0 | True | linux-64 | show | ||
| ksw | 22487 | 0 | True | osx-64 | show | ||
| gembs | 22243 | 0 | True | linux-64 | show | ||
| gembs | 22243 | 0 | True | osx-64 | show | ||
| hera | 22123 | 0 | True | conda/mamba bug | linux-64 | show | duplicate name in conda-forge |
| bioconductor-singlecelltk | 22093 | 0 | True | linux-64 | show | ||
| bioconductor-singlecelltk | 22093 | 0 | True | dependency issue | osx-64 | show | bioconductor-alabaster.base needs to be fixed |
| r-exomedepth | 21936 | 0 | True | osx-64 | show | ||
| bioconductor-genestructuretools | 21804 | 0 | True | linux-64 | show | ||
| bioconductor-ritan | 21627 | 0 | True | linux-64 | show | ||
| fastq-multx | 21568 | 0 | True | osx-64 | show | ||
| mrbayes | 21533 | 0 | True | osx-64 | show | ||
| bioconductor-ccmap | 21516 | 0 | True | linux-64 | show | ||
| bioconductor-beadarrayusecases | 21382 | 0 | True | linux-64 | show | ||
| bioconductor-evaluomer | 21134 | 0 | True | linux-64 | show | ||
| radsex | 21119 | 0 | True | linux-64 | show | ||
| bioconductor-etec16s | 20988 | 0 | True | dependency issue | linux-64 | show | metagenomeseq 1.47 Not ready for BioC 3.20 |
| ucsc-checkhgfindspec | 20962 | 0 | True | linux-64 | show | ||
| ucsc-checkhgfindspec | 20962 | 0 | True | linux-aarch64 | show | ||
| bioconductor-moda | 20908 | 0 | True | linux-64 | show | ||
| bioconductor-parathyroidse | 20851 | 0 | True | linux-64 | show | ||
| simka | 20710 | 0 | True | osx-64 | show | ||
| bioconductor-interactivedisplay | 20158 | 0 | True | linux-64 | show | ||
| bioconductor-msd16s | 19964 | 0 | True | dependency issue | linux-64 | show | metagenomeseq 1.47 Not ready for BioC 3.20 |
| bioconductor-ahensdbs | 19959 | 0 | True | linux-64 | show | ||
| ma | 19918 | 0 | True | linux-64 | show | ||
| r-recetox-aplcms | 19809 | 0 | True | dependency issue | linux-64 | show | |
| treebest | 19126 | 0 | True | osx-64 | show | ||
| bioconductor-italics | 18919 | 0 | True | linux-64 | show | ||
| pxblat | 18896 | 0 | True | linux-64 | show | ||
| pxblat | 18896 | 0 | True | osx-64 | show | ||
| abra2 | 18851 | 0 | True | linux-64 | show | ||
| abra2 | 18851 | 0 | True | linux-aarch64 | show | ||
| bioconductor-tweedeseqcountdata | 18751 | 0 | True | linux-64 | show | ||
| sequenza-utils | 18578 | 0 | True | osx-64 | show | ||
| elector | 18499 | 0 | True | linux-64 | show | ||
| pegasuspy | 18431 | 0 | True | linux-64 | show | ||
| pegasuspy | 18431 | 0 | True | osx-64 | show | ||
| bioconductor-rnainteractmapk | 18342 | 0 | True | dependency issue | linux-64 | show | bioconductor-rnainteract not available for 3.20 yet |
| metilene | 18236 | 0 | True | osx-64 | show | ||
| orfipy | 18214 | 0 | True | osx-64 | show | ||
| bioconductor-circrnaprofiler | 18128 | 0 | True | linux-64 | show | ||
| treemix | 17763 | 0 | True | osx-64 | show | ||
| bioconductor-iclusterplus | 17728 | 0 | True | linux-64 | show | ||
| bioconductor-iclusterplus | 17728 | 0 | True | linux-aarch64 | show | ||
| bioconductor-iclusterplus | 17728 | 0 | True | osx-64 | show | ||
| r-minems2 | 17693 | 0 | True | osx-64 | show | ||
| bioconductor-cetf | 17619 | 0 | True | osx-64 | show | ||
| r-fastbaps | 17454 | 0 | True | osx-64 | show | ||
| r-mixkernel | 17306 | 0 | True | linux-64 | show | ||
| perl-sanger-cgp-battenberg | 16705 | 0 | True | linux-64 | show | ||
| r-samr | 16506 | 0 | True | linux-64 | show | ||
| r-samr | 16506 | 0 | True | osx-64 | show | ||
| bioconductor-gpumagic | 16261 | 0 | True | linux-64 | show | ||
| akt | 16215 | 0 | True | compiler error | osx-64 | show | |
| velocyto.py | 16150 | 0 | True | test failure | linux-64 | show | |
| grafimo | 16091 | 0 | True | linux-64 | show | ||
| leviosam | 16085 | 0 | True | linux-64 | show | ||
| magicblast | 16079 | 0 | True | linux-64 | show | ||
| magicblast | 16079 | 0 | True | osx-64 | show | ||
| bioconductor-rnamodr.data | 16025 | 0 | True | linux-64 | show | ||
| verkko | 15990 | 0 | True | linux-64 | show | ||
| verkko | 15990 | 0 | True | osx-64 | show | ||
| bioconductor-mousegastrulationdata | 15940 | 0 | True | linux-64 | show | ||
| plass | 15895 | 0 | True | linux-64 | show | ||
| plass | 15895 | 0 | True | linux-aarch64 | show | ||
| chia-rep | 15869 | 0 | True | linux-64 | show | ||
| chia-rep | 15869 | 0 | True | osx-64 | show | ||
| spacepharer | 15856 | 0 | True | linux-64 | show | ||
| spacepharer | 15856 | 0 | True | linux-aarch64 | show | ||
| bioconductor-rfarm | 15844 | 0 | True | linux-64 | show | ||
| microphaser | 15815 | 0 | True | linux-64 | show | ||
| tiptoft | 15742 | 0 | True | linux-64 | show | ||
| tiptoft | 15742 | 0 | True | osx-64 | show | ||
| genoboo | 15577 | 0 | True | linux-64 | show | ||
| calib | 15410 | 0 | True | linux-64 | show | ||
| calib | 15410 | 0 | True | osx-64 | show | ||
| interproscan | 15346 | 0 | True | linux-64 | show | ||
| vadr | 15344 | 0 | True | linux-64 | show | ||
| sicer2 | 15227 | 0 | True | linux-64 | show | ||
| sicer2 | 15227 | 0 | True | osx-64 | show | ||
| pydnase | 15206 | 0 | True | linux-64 | show | ||
| pydnase | 15206 | 0 | True | osx-64 | show | ||
| ucsc-hgtrackdb | 14940 | 0 | True | linux-64 | show | ||
| ucsc-hubcheck | 14904 | 0 | True | linux-64 | show | ||
| autogrid | 14843 | 0 | True | compiler error | osx-64 | show | |
| corset | 14812 | 0 | True | linux-64 | show | ||
| corset | 14812 | 0 | True | osx-64 | show | ||
| varfish-server-worker | 14688 | 0 | True | linux-64 | show | ||
| varfish-server-worker | 14688 | 0 | True | linux-aarch64 | show | ||
| chorus2 | 14511 | 0 | True | dependency issue | linux-64 | show | |
| chorus2 | 14511 | 0 | True | dependency issue | osx-64 | show | |
| r-nanopore | 14498 | 0 | True | linux-64 | show | ||
| r-nanopore | 14498 | 0 | True | osx-64 | show | ||
| goldrush | 14318 | 0 | True | osx-64 | show | ||
| tadbit | 14193 | 0 | True | linux-64 | show | ||
| tadbit | 14193 | 0 | True | osx-64 | show | ||
| pourrna | 14181 | 0 | True | linux-64 | show | ||
| pourrna | 14181 | 0 | True | osx-64 | show | ||
| methylpy | 14071 | 0 | True | linux-64 | show | ||
| methylpy | 14071 | 0 | True | osx-64 | show | ||
| hifiasm_meta | 14041 | 0 | True | osx-64 | show | ||
| kissplice | 14040 | 0 | True | osx-64 | show | ||
| r-enchantr | 13941 | 0 | True | linux-64 | show | ||
| bte | 13586 | 0 | True | linux-64 | show | ||
| bte | 13586 | 0 | True | osx-64 | show | ||
| pyfba | 13520 | 0 | True | linux-64 | show | ||
| pyfba | 13520 | 0 | True | osx-64 | show | ||
| balrog | 13349 | 0 | True | osx-64 | show | ||
| blastalign | 13336 | 0 | True | linux-64 | show | ||
| bioconductor-umi4cats | 13330 | 0 | True | linux-64 | show | ||
| kmasker | 13294 | 0 | True | linux-64 | show | ||
| kmasker | 13294 | 0 | True | osx-64 | show | ||
| r-pore | 13120 | 0 | True | osx-64 | show | ||
| bioconductor-nanomethviz | 13057 | 0 | True | linux-64 | show | ||
| r-fgwas | 13016 | 0 | True | linux-64 | show | ||
| bwa-meme | 12985 | 0 | True | linux-64 | show | ||
| bioconductor-epigrahmm | 12974 | 0 | True | linux-64 | show | ||
| cellprofiler | 12918 | 0 | True | linux-64 | show | ||
| bolt | 12807 | 0 | True | linux-64 | show | ||
| r-mmgenome | 12785 | 0 | True | osx-64 | show | ||
| nwalign3 | 12684 | 0 | True | compiler error | linux-64 | show | |
| nwalign3 | 12684 | 0 | True | compiler error | osx-64 | show | |
| bioconductor-synextend | 12513 | 0 | True | linux-64 | show | ||
| ghm | 12456 | 0 | True | linux-64 | show | ||
| perl-atlas-modules | 12386 | 0 | True | linux-64 | show | ||
| perl-atlas-modules | 12386 | 0 | True | osx-64 | show | ||
| genblastg | 12045 | 0 | True | linux-64 | show | ||
| genblastg | 12045 | 0 | True | osx-64 | show | ||
| bioconductor-screpertoire | 11737 | 0 | True | osx-64 | show | ||
| spring | 11727 | 0 | True | linux-64 | show | ||
| spring | 11727 | 0 | True | linux-aarch64 | show | ||
| r-xgr | 11667 | 0 | True | linux-64 | show | ||
| igblast-parser | 11463 | 0 | True | linux-64 | show | ||
| igblast-parser | 11463 | 0 | True | osx-64 | show | ||
| r-tidygenomics | 11375 | 0 | True | osx-64 | show | ||
| bioconductor-uncoverapplib | 11295 | 0 | True | linux-64 | show | ||
| bioconductor-nanoporernaseq | 11238 | 0 | True | linux-64 | show | ||
| secedo | 11189 | 0 | True | linux-64 | show | ||
| secedo | 11189 | 0 | True | osx-64 | show | ||
| r-conos | 11177 | 0 | True | osx-64 | show | ||
| fastq-join | 11077 | 0 | True | osx-64 | show | ||
| squid | 11070 | 0 | True | linux-64 | show | ||
| sensv | 11013 | 0 | True | linux-64 | show | ||
| r-metalonda | 11009 | 0 | True | linux-64 | show | ||
| hapog | 10931 | 0 | True | linux-64 | show | ||
| hapog | 10931 | 0 | True | osx-64 | show | ||
| ryuto | 10902 | 0 | True | linux-64 | show | ||
| ryuto | 10902 | 0 | True | osx-64 | show | ||
| seqyclean | 10820 | 0 | True | osx-64 | show | ||
| bioconductor-musicatk | 10815 | 0 | True | dependency issue | linux-64 | show | needs r-conclust added to conda-forge |
| bioconductor-musicatk | 10815 | 0 | True | dependency issue | osx-64 | show | needs r-conclust added to conda-forge |
| bioconductor-pipecomp | 10734 | 0 | True | linux-64 | show | ||
| miranda | 10636 | 0 | True | source download error | linux-64 | show | lint fails due to license; source (presumably with license) unavailable |
| miranda | 10636 | 0 | True | osx-64 | show | ||
| pkiss | 10445 | 0 | True | osx-64 | show | ||
| appspam | 10381 | 0 | True | linux-64 | show | ||
| dropest | 10338 | 0 | True | linux-64 | show | ||
| ucsc-parahub | 10159 | 0 | True | linux-aarch64 | show | ||
| cassiopee | 10092 | 0 | True | linux-64 | show | ||
| cassiopee | 10092 | 0 | True | osx-64 | show | ||
| telescope | 10065 | 0 | True | compiler error | linux-64 | show | |
| telescope | 10065 | 0 | True | compiler error | osx-64 | show | |
| squeakr | 10048 | 0 | True | linux-64 | show | ||
| cobs | 9950 | 0 | True | linux-64 | show | ||
| cobs | 9950 | 0 | True | linux-aarch64 | show | ||
| cobs | 9950 | 0 | True | osx-64 | show | ||
| nimnexus | 9900 | 0 | True | linux-64 | show | ||
| breakdancer | 9791 | 0 | True | linux-64 | show | ||
| peakranger | 9752 | 0 | True | linux-64 | show | ||
| ucsc-endsinlf | 9719 | 0 | True | linux-64 | show | ||
| svict | 9676 | 0 | True | osx-64 | show | ||
| bioconductor-orfhunter | 9645 | 0 | True | osx-64 | show | ||
| mockinbird | 9644 | 0 | True | linux-64 | show | ||
| mockinbird | 9644 | 0 | True | osx-64 | show | ||
| bioconductor-infinityflow | 9591 | 0 | True | linux-64 | show | ||
| gsearch | 9591 | 0 | True | compiler error | linux-64 | show | hnsw.file_dump this method takes 2 arguments but 1 argument was supplied |
| r-quilt | 9461 | 0 | True | dependency issue | osx-64 | show | |
| gapfiller | 9293 | 0 | True | linux-64 | show | ||
| r-perfmeas | 9253 | 0 | True | osx-64 | show | ||
| r-tailfindr | 9159 | 0 | True | osx-64 | show | ||
| bioconductor-biggr | 9152 | 0 | True | linux-64 | show | ||
| commet | 9115 | 0 | True | linux-64 | show | ||
| commet | 9115 | 0 | True | osx-64 | show | ||
| opencontactcli | 9016 | 0 | True | linux-64 | show | ||
| ucsc-bedjointaboffset | 9003 | 0 | True | linux-64 | show | ||
| ucsc-bedjointaboffset | 9003 | 0 | True | linux-aarch64 | show | ||
| cytocad | 8931 | 0 | True | linux-64 | show | ||
| bsmap | 8893 | 0 | True | linux-64 | show | ||
| bioconductor-flames | 8863 | 0 | True | linux-64 | show | ||
| bioconductor-flames | 8863 | 0 | True | osx-64 | show | ||
| ogdf | 8852 | 0 | True | linux-64 | show | ||
| pfp | 8671 | 0 | True | linux-64 | show | ||
| bioconductor-summix | 8605 | 0 | True | linux-64 | show | ||
| bioconductor-dce | 8435 | 0 | True | linux-64 | show | ||
| r-tinyarray | 8377 | 0 | True | linux-64 | show | ||
| bioconductor-autonomics | 8377 | 0 | True | linux-64 | show | ||
| bioconductor-bnem | 8336 | 0 | True | linux-64 | show | ||
| bioconductor-wppi | 8314 | 0 | True | dependency issue | linux-64 | show | needs bioconductor-omnipathr to be fixed |
| bioconductor-wppi | 8314 | 0 | True | dependency issue | osx-64 | show | needs bioconductor-omnipathr to be fixed |
| r-calder2 | 8265 | 0 | True | linux-64 | show | ||
| r-eacon | 8249 | 0 | True | linux-64 | show | ||
| resmico | 8152 | 0 | True | linux-64 | show | ||
| resmico | 8152 | 0 | True | osx-64 | show | ||
| r-sigtree | 8135 | 0 | True | linux-64 | show | ||
| r-sigtree | 8135 | 0 | True | osx-64 | show | ||
| perl-cairo | 8053 | 0 | True | linux-64 | show | ||
| perl-cairo | 8053 | 0 | True | osx-64 | show | ||
| pbwt | 8014 | 0 | True | linux-64 | show | ||
| bioconductor-mousethymusageing | 7943 | 0 | True | linux-64 | show | ||
| sneep | 7849 | 0 | True | osx-64 | show | ||
| r-cimpl | 7828 | 0 | True | osx-64 | show | ||
| hiddendomains | 7730 | 0 | True | linux-64 | show | ||
| minys | 7617 | 0 | True | osx-64 | show | ||
| r-ampvis | 7609 | 0 | True | osx-64 | show | ||
| bioconductor-pdatk | 7591 | 0 | True | test failure | linux-64 | show | /opt/conda/conda-bld/bioconductor-pdatk_1702300846111/test_tmp/run_test.sh: line... 7: -e: command not found
|
| mmquant | 7588 | 0 | True | osx-64 | show | ||
| psass | 7486 | 0 | True | linux-64 | show | ||
| epicseg | 7464 | 0 | True | linux-64 | show | ||
| ep |