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Update sylph to 0.8.0 #52776

Merged
merged 3 commits into from
Dec 16, 2024
Merged

Update sylph to 0.8.0 #52776

merged 3 commits into from
Dec 16, 2024

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Update sylph: 0.7.00.8.0

install with bioconda Conda

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Recipe recipes/sylph (click to view/edit other files)
Summary sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI.
Home https://github.com/bluenote-1577/sylph
Releases https://github.com/bluenote-1577/sylph/tags
Recipe Maintainer(s) @bluenote-1577
Author @bluenote-1577

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Dec 13, 2024
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Seems like osx-64 tests are failing. They were ok last version. I should have made no breaking changes with this update. Seems like

02:37:46 BIOCONDA INFO (ERR)   In file included from /opt/mambaforge/envs/bioconda/conda-bld/sylph_1734057219977/_build_env/.cargo/registry/src/index.crates.io-6f17d22bba15001f/libz-ng-sys-1.1.20/src/zlib-ng/arch/generic/compare256_c.c:7:
02:37:46 BIOCONDA INFO (ERR)   /opt/mambaforge/envs/bioconda/conda-bld/sylph_1734057219977/_build_env/.cargo/registry/src/index.crates.io-6f17d22bba15001f/libz-ng-sys-1.1.20/src/zlib-ng/zutil_p.h:22:20: error: call to undeclared library function 'aligned_alloc' with type 'void *(unsigned long, unsigned long)'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
02:37:46 BIOCONDA INFO (ERR)      22 |     return (void *)aligned_alloc(64, size);  /* Defined in C11 */
02:37:46 BIOCONDA INFO (ERR)         |                    ^
02:37:46 BIOCONDA INFO (ERR)   /opt/mambaforge/envs/bioconda/conda-bld/sylph_1734057219977/_build_env/.cargo/registry/src/index.crates.io-6f17d22bba15001f/libz-ng-sys-1.1.20/src/zlib-ng/zutil_p.h:22:20: note: include the header <stdlib.h> or explicitly provide a declaration for 'aligned_alloc'

Apparently aligned_alloc is a C11 feature and is not detected? Maybe related to here: #52553

@mencian mencian merged commit 47f0f47 into master Dec 16, 2024
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@mencian mencian deleted the bump/sylph branch December 16, 2024 11:03
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3 participants