Update quantms-utils to 0.0.12

[BiocondaBot]

Update quantms-utils: 0.0.11 → 0.0.12

Info	Link or Description
Recipe	recipes/quantms-utils (click to view/edit other files)
Summary	Python package with scripts and helpers for the quantms workflow.
Home	https://www.github.com/bigbio/quantms-utils
Releases	https://pypi.org/pypi/quantms_utils/json
Recipe Maintainer(s)	@ypriverol

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the quantms-utils package. The version number has been incremented from "0.0.11" to "0.0.12". Additionally, the SHA256 checksum for the source package has been updated from f1205db7526f09d36606288782363b352546a100b4763c16d988d7cdb45bf26f to 99ecf7e68acad272749040b231701018aaa76c391ceb234eaefd6f6842c2a4e6. The setuptools and poetry-core dependencies have been added to the host requirements. The version of the sdrf-pipelines dependency has been updated from ">=0.0.29" to ">=0.0.31". New dependencies pyarrow and protobuf have been added to the run requirements. The Python version constraint in the host requirements has been modified to remove the upper limit for Python, changing from ">=3.8,<4.0" to ">=3.8". The installation script has been updated to include --no-build-isolation and --no-cache-dir options. Minor formatting changes have been made to the about section, including the addition of a license_family field and a doc_url field.

Possibly related PRs

• Update bioconda-utils to 3.3.2 #51044: This PR updates the bioconda-utils package's version and SHA256 checksum, similar to the version and checksum updates in the main PR for quantms-utils.
• Update bactopia-py to 1.2.0 #51154: This PR updates the bactopia-py package's version and SHA256 checksum, reflecting similar changes made in the main PR for quantms-utils.
• Update bactopia-py to 1.2.1 #51226: This PR updates the bactopia-py package's version and SHA256 checksum, which aligns with the version and checksum updates in the main PR for quantms-utils.
• Update pgscatalog-utils to 1.4.0 #51234: This PR updates the pgscatalog-utils package's version and SHA256 checksum, mirroring the version and checksum updates in the main PR for quantms-utils.
• Update mgnify-pipelines-toolkit to 0.1.7 #51237: This PR updates the mgnify-pipelines-toolkit package's version and SHA256 checksum, which is consistent with the version and checksum updates in the main PR for quantms-utils.
• Update sequali to 0.12.0 #51271: This PR updates the sequali package's version and SHA256 checksum, reflecting similar changes made in the main PR for quantms-utils.
• Update metabolights-utils to 1.1.11 #51352: This PR updates the metabolights-utils package's version and SHA256 checksum, which aligns with the version and checksum updates in the main PR for quantms-utils.
• Update metabolights-utils to 1.1.12 #51383: This PR updates the metabolights-utils package's version and SHA256 checksum, mirroring the version and checksum updates in the main PR for quantms-utils.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 7addd40 and 6252b52.

📒 Files selected for processing (1)

• recipes/quantms-utils/meta.yaml (2 hunks)

🚧 Files skipped from review as they are similar to previous changes (1)

• recipes/quantms-utils/meta.yaml

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[ypriverol]

@bgruening, For some reason, the bioconda.bioconda-recipes is cancelled but without a clear reason. Have you seen this before?

[ypriverol]

@mencian can you check why the building of the package is taking so long? but in arm is really quick.

[mencian]

@ypriverol this seems to be happening with other PRs as well; not exactly sure of the cause. See #51354, #51373, #51378. I'll look into this some more~

[ypriverol]

@bgruening can you help us here ?

[ypriverol]

@mencian do you know who can help us here?

[mencian]

@ypriverol Sorry for the late response - there's no obvious way to workaround the limited resources on the Azure machines, which are capped at 2 cores and 7GB memory. One way is to build this recipe on the bulk branch, which has machines with 16GB memory, though I haven't tinkered with anything on the bulk branch before.

[ypriverol]

Thanks @mencian we managed to build the recipe in GitHub actions https://github.com/bigbio/quantms-utils/actions/runs/11313535585/job/31462424827 from this recipe: https://github.com/bigbio/quantms-utils/blob/main/recipe/meta.yaml But I don't see differences major here.

Let's wait until @bgruening gives us here a suggestion.