Add zamp

recipes/zamp/meta.yaml

@@ -0,0 +1,54 @@
+{% set name = "zamp" %}
+{% set version = "1.0.0" %}
+
+package:
+ name: {{ name }}
+ version: {{ version }}
+
+source:
+ url: https://github.com/metagenlab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+ sha256: 366d1a1bdff60e1a8100298608f20ab2294ef476a1da1bee9c1975641c495f6e
+
+build:
+ number: 0
+ noarch: python
+ entry_points:
+ - zamp=zamp.__main__:main
+ script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
+ run_exports:
+ - {{ pin_subpackage('zamp', max_pin="x.x") }}
+
+requirements:
+ host:
+ - python >=3.11
+ - pip
+ - setuptools
+ run:
+ - python >=3.11
+ - snakemake-minimal >=8.0.0
+ - Click >=8.1.3
+ - attrmap >=0.0.7
+ - snaketool-utils >=0.0.5
+ - metasnek >=0.0.8
+ - biopython >=1.83
+ - pandas >=2.2.1
+ - apptainer >=1.3.2
+
+test:
+ commands:
+ - zamp -h
+ - zamp -v
+
+about:
+ home: https://github.com/metagenlab/zAMP/
+ license: MIT
+ summary: 'zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics'
+ license_family: MIT
+ license_file: LICENSE
+
+extra:
+ container:
+ extended-base: true
+ recipe-maintainers:
+ - farchaab
+ - vicasze