Update bioconda utils docs, update deps, clean up docs - #53
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docs: new args
dark mode real time search copy to clipboard button responsive design just plain prettier
paperbenni
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paperbenni
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July 4, 2026 11:16
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@jmarshall does this look good to you? |
aliciaaevans
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Jul 6, 2026
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Just a couple of things.
Thanks for adding the documentation for bioconda-utils.
Co-authored-by: Alicia A. Evans <108547992+aliciaaevans@users.noreply.github.com>
…oconda-docs into update-bioconda-utils-docs
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this should be good to go now @aliciaaevans |
bgruening
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Jul 7, 2026
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Docs updates
bioconda-utils docs were scattered throughout the docs pages, and some commands were undocumented entirely. This adds a central bioconda-utils docs page and makes other pages link to it.
Pipeline updates
The docs build pipeline referenced a legacy bioconda-utils dependencies txt file to install dependencies. This switches the build pipeline over to pixi, which also brings it in line with how bioconda-utils is built.
It also documents the CLI changes in bioconda/bioconda-utils#1125
SSG updates
I switched the theme to PyData from alabaster. This gives us responsive design, a table of contents, dark mode, clipboard buttons, easy ways of linking to pages, a modern layout basically for free.
The live server also flagged a few warnings which I fixed
Cleanup
Some links were invalid, some pages were suggesting usage of
mambacli or micromamba.This was not a thorough pass, some pages still mention Python 3.6, just things I noticed while primarily writing the bioconda-utils docs
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