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Description
Description
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For our Storage Refactor epic, we are creating a new "Mappings" table. See our LucidChart and GitHub Discussion for more details on what the Mappings table should look like.
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As part of this ticket, we should update our
src/anyvar/storage/postgres.py
>create_schema
method so that it can create the Mappings table.- Note: if we've already finished Issue #202 prior to this ticket, then this functionality may have moved. But we'll need to update this logic no matter where it lives
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We'll need to update our liftover logic to save variants and their liftover equivalents to this table, rather than using annotations
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We'll also need to update our logic for forward and reverse transcription and translation to utilize the mapping table
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priority:highHigh priorityHigh priority