Merge pull request #5555 from berkeley-dsep-infra/staging

Merge #5552, #5554.

deployments/datahub/images/default/Dockerfile

@@ -57,8 +57,10 @@ RUN curl --silent --location --fail ${SHINY_SERVER_URL} > /tmp/shiny-server.deb
     apt install --no-install-recommends --yes /tmp/shiny-server.deb && \
     rm /tmp/shiny-server.deb
 
-# Set CRAN mirror to rspm before we install anything
+# Install our custom Rprofile.site file
 COPY Rprofile.site /usr/lib/R/etc/Rprofile.site
+# Create directory for additional R/RStudio setup code
+RUN mkdir /etc/R/Rprofile.site.d
 # RStudio needs its own config
 COPY rsession.conf /etc/rstudio/rsession.conf
 

deployments/datahub/images/default/Rprofile.site

@@ -16,4 +16,21 @@ options(repos = c(CRAN = "https://packagemanager.rstudio.com/all/__linux__/jammy
 # below sets it to be binary. This may improve image build times.
 # If it works, it'd be better to dynamically set the R version as above, and
 # also the RStudio Server version if possible.
-options(HTTPUserAgent = "RStudio Server (2021.9.1.372); R (4.3.1 x86_64-pc-linux-gnu x86_64 linux-gnu)")
+options(HTTPUserAgent = "RStudio Server (2023.12.0.369); R (4.3.2 x86_64-pc-linux-gnu x86_64 linux-gnu)")
+
+
+## Source extra Rprofile files.
+#
+# This lets us easily add new code via extraFiles (or other z2jh-related
+# magic) without having to rebuild the image each time.
+
+# Get a list of files in the directory
+rprofile_dir <- "/etc/R/Rprofile.site.d/"
+rprofile_files <- list.files(rprofile_dir, full.names = TRUE)
+
+# Source each file
+for (rprofile_file in rprofile_files) {
+    cat("Sourcing:", rprofile_file, "\n")
+    source(rprofile_file)
+}
+